Variant report

Variant	rs111545289
Chromosome Location	chr4:91570155-91570156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA1	chr4:91569695-91570762	PBDE	blood:	n/a	chr4:91570171-91570192 chr4:91570176-91570186 chr4:91570173-91570189

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:91570154-91570204	HCT-116	colon:	n/a
2	chr4:91570154-91570204	HCF	heart:	n/a
3	chr4:91570154-91570204	PANC-1	pancreas:	n/a
4	chr4:91570154-91570204	HCM	heart:	n/a
5	chr4:91570154-91570204	HUVEC	blood vessel:	n/a
6	chr4:91570154-91570204	HPAEpiC	pulmonary alveolar:	n/a
7	chr4:91570154-91570204	MCF10A-Er-Src	breast:	n/a
8	chr4:91570154-91570204	CMK	blood:	n/a
9	chr4:91570154-91570204	SAEC	small airway:	n/a
10	chr4:91570154-91570204	SK-N-SH	brain:	n/a
11	chr4:91570154-91570204	NHBE	bronchial:	n/a
12	chr4:91570154-91570204	HNPCEpiC	eye:	n/a
13	chr4:91570154-91570204	SK-N-SH_RA	brain:	n/a
14	chr4:91570154-91570204	AG09319	gingival:	n/a
15	chr4:91570154-91570204	NHDF-neo	bronchial:	n/a
16	chr4:91570154-91570204	BJ	skin:	n/a
17	chr4:91570154-91570204	ECC-1	luminal epithelium:	n/a
18	chr4:91570154-91570204	GM12892	blood:	n/a
19	chr4:91570154-91570204	HEEpiC	esophagus:	n/a
20	chr4:91570154-91570204	AG04450	lung:	fetal
21	chr4:91570154-91570204	HRE	kidney:	n/a
22	chr4:91570154-91570204	IMR90	lung:	fetal
23	chr4:91570154-91570204	H1-hESC	embryonic stem cell:	embryo
24	chr4:91570154-91570204	GM06990	blood:	n/a
25	chr4:91570154-91570204	HCPEpiC	choroid plexus:	n/a
26	chr4:91570154-91570204	SKMC	muscle:	n/a
27	chr4:91570154-91570204	AoSMC	blood vessel:	n/a
28	chr4:91570154-91570204	T-47D	breast:	n/a
29	chr4:91570154-91570204	NB4	blood:	n/a
30	chr4:91570154-91570204	NH-A	brain:	n/a
31	chr4:91570154-91570204	HAEpiC	amniotic membrane:	n/a
32	chr4:91570154-91570204	Hela-S3	cervix:	n/a
33	chr4:91570154-91570204	Jurkat	blood:	n/a
34	chr4:91570154-91570204	MCF-7	breast:	n/a
35	chr4:91570154-91570204	HepG2	liver:	n/a
36	chr4:91570154-91570204	HRPEpiC	eye:	n/a
37	chr4:91570154-91570204	BE2_C	brain:	n/a
38	chr4:91570154-91570204	A549	lung:	n/a
39	chr4:91570154-91570204	HL-60	blood:	n/a
40	chr4:91570154-91570204	RPTEC	kidney:	n/a
41	chr4:91570154-91570204	PrEC	prostate:	n/a
42	chr4:91570154-91570204	Caco-2	colon:	n/a
43	chr4:91570154-91570204	GM19239	blood:	n/a
44	chr4:91570154-91570204	U87	brain:	n/a
45	chr4:91570154-91570204	AG10803	skin:	n/a
46	chr4:91570154-91570204	HEK293	kidney:	embryo
47	chr4:91570154-91570204	HRCEpiC	kidney:	n/a
48	chr4:91570154-91570204	HMEC	breast:	n/a
49	chr4:91570154-91570204	AG04449	skin:	fetal
50	chr4:91570154-91570204	Hepatocyte	liver:	n/a

No data

Variant related genes	Relation type
CCSER1	TF binding region
CCSER1	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931074	chr4:90970476-91753697	Enhancers Strong transcription Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv534470	chr4:91342219-91842807	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv879545	chr4:91546380-91603567	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879546	chr4:91546380-91606389	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879547	chr4:91546380-91661217	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879548	chr4:91558486-91661217	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv879549	chr4:91568530-91603567	Flanking Active TSS ZNF genes & repeats Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv879550	chr4:91568530-91606389	Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv879551	chr4:91568530-91615595	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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