Variant report

Variant	rs11155089
Chromosome Location	chr6:140178977-140178978
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12195861	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12203040	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12205724	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869066	chr6:139777114-140639695	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
2	nsv830820	chr6:140059279-140255292	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1017015	chr6:140084137-140300565	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1019407	chr6:140087307-140304334	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1016532	chr6:140174639-141029988	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11155089	NMBR	cis	parietal	SCAN
rs11155089	IL22RA2	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:140172200-140179000	Enhancers	Fetal Intestine Large	intestine
2	chr6:140173400-140180200	Enhancers	Fetal Kidney	kidney
3	chr6:140173400-140182200	Enhancers	Rectal Smooth Muscle	rectum
4	chr6:140174600-140187000	Weak transcription	Psoas Muscle	Psoas
5	chr6:140175200-140179400	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:140175200-140179800	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:140175800-140183600	Weak transcription	NHDF-Ad	bronchial
8	chr6:140176400-140180200	Enhancers	Pancreatic Islets	Pancreatic Islet
9	chr6:140177200-140179600	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:140178000-140180600	Weak transcription	Fetal Lung	lung
11	chr6:140178600-140179800	Weak transcription	Colon Smooth Muscle	Colon
12	chr6:140178600-140184000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:140178800-140179600	Weak transcription	Fetal Intestine Small	intestine
14	chr6:140178800-140180000	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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