Variant report

Variant	rs111555233
Chromosome Location	chr5:106325873-106325874
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:81 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016354	chr5:105752391-106392762	ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv830439	chr5:106192038-106383828	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv882679	chr5:106263197-106399718	Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1795812	chr5:106308008-106326299	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
6	esv1799346	chr5:106308008-106326299	Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
7	esv1815884	chr5:106308008-106326299	Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
8	esv1843510	chr5:106308008-106326299	Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
9	esv1850520	chr5:106308008-106326299	Active TSS Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
10	esv1815273	chr5:106308008-106326475	Enhancers Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
11	esv1799129	chr5:106311248-106326299	Weak transcription Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
12	esv1802235	chr5:106311248-106326299	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
13	esv1817753	chr5:106311248-106326299	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
14	esv1844969	chr5:106311248-106326299	Genic enhancers Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island lncRNA	2 gene(s)	inside rSNPs	n/a
15	esv3468515	chr5:106322753-106328351	Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	n/a
16	esv3447380	chr5:106323553-106327451	Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	n/a
17	esv3468518	chr5:106323878-106327626	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
18	esv3468521	chr5:106324256-106326761	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
19	nsv513254	chr5:106324511-106326574	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
20	esv3468520	chr5:106324614-106326535	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
21	esv3328165	chr5:106324640-106326577	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
22	esv3377079	chr5:106324653-106326559	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
23	esv3496610	chr5:106324665-106326494	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
24	esv3468517	chr5:106324671-106326517	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
25	esv3468522	chr5:106324671-106326518	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
26	esv18331	chr5:106324680-106326429	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
27	nsv820881	chr5:106324680-106326544	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
28	nsv823167	chr5:106324680-106326544	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
29	esv3468516	chr5:106324691-106326471	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
30	esv3496612	chr5:106324693-106326494	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
31	esv3496611	chr5:106324693-106326516	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
32	esv2922	chr5:106324694-106326572	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
33	esv3468523	chr5:106324752-106326444	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
34	nsv823168	chr5:106324795-106326223	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
35	nsv823169	chr5:106324795-106326544	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
36	esv1794193	chr5:106324802-106326299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
37	esv1802693	chr5:106324802-106326299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
38	esv1803343	chr5:106324802-106326299	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
39	esv1821649	chr5:106324802-106326299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
40	esv1822695	chr5:106324802-106326299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
41	esv1843777	chr5:106324802-106326299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
42	esv1844196	chr5:106324802-106326299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
43	esv1845009	chr5:106324802-106326299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
44	esv1845389	chr5:106324802-106326299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
45	esv1846310	chr5:106324802-106326299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
46	esv1848549	chr5:106324802-106326299	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
47	esv1793317	chr5:106324802-106326475	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
48	esv1793578	chr5:106324802-106326475	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a
49	esv1798063	chr5:106324802-106326475	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a
50	esv1815707	chr5:106324802-106326475	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106322200-106326800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:106322800-106328200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:106323800-106336000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:106325000-106327000	Enhancers	iPS-15b Cell Line	embryonic stem cell

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