Variant report

Variant	rs111555277
Chromosome Location	chr6:71890862-71890863
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527265	chr6:71867477-71902656	Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886149	chr6:71875777-71936292	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv886150	chr6:71888871-71936292	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1016393	chr6:71890237-71941786	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv526921	chr6:71890237-71950242	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:71887200-71891200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:71887400-71892000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr6:71889200-71892200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:71889400-71892200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr6:71889600-71891200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr6:71890200-71892000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:71890400-71891200	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:71890600-71891200	Enhancers	HSMMtube	muscle
9	chr6:71890600-71891800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:71890600-71892000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr6:71890600-71892000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr6:71890600-71892200	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:71890600-71892600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr6:71890800-71891000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr6:71890800-71891600	Enhancers	H9 Cell Line	embryonic stem cell
16	chr6:71890800-71891600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr6:71890800-71891600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:71890800-71891800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:71890800-71891800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr6:71890800-71891800	Enhancers	Muscle Satellite Cultured Cells	--
21	chr6:71890800-71891800	Enhancers	A549	lung
22	chr6:71890800-71891800	Enhancers	NHEK	skin
23	chr6:71890800-71891800	Enhancers	Osteobl	bone
24	chr6:71890800-71892000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
25	chr6:71890800-71892000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:71890800-71892000	Enhancers	Fetal Heart	heart
27	chr6:71890800-71892000	Enhancers	Hela-S3	cervix
28	chr6:71890800-71892000	Enhancers	HSMM	muscle
29	chr6:71890800-71892000	Enhancers	NHDF-Ad	bronchial
30	chr6:71890800-71892200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:71890800-71892200	Enhancers	HMEC	breast

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