Variant report

Variant	rs111559479
Chromosome Location	chr3:154799406-154799407
allele	-/TT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:154795817-154801378	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
MME	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868930	chr3:154076125-154820242	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1000140	chr3:154336261-154905740	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
6	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv963491	chr3:154795648-154803797	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv965224	chr3:154798636-154801821	Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a
9	esv2158778	chr3:154799406-154799408	Active TSS Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154796000-154802200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:154796200-154799600	Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr3:154796200-154799600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr3:154796400-154800000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:154796400-154800000	Active TSS	NHLF	lung
6	chr3:154796600-154800000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:154796600-154800200	Active TSS	Psoas Muscle	Psoas
8	chr3:154796600-154800600	Active TSS	Breast Myoepithelial Primary Cells	Breast
9	chr3:154796600-154802000	Active TSS	Duodenum Mucosa	Duodenum
10	chr3:154796800-154799600	Active TSS	Muscle Satellite Cultured Cells	--
11	chr3:154796800-154801200	Active TSS	Fetal Kidney	kidney
12	chr3:154797000-154799600	Active TSS	Skeletal Muscle Female	skeletal muscle
13	chr3:154797200-154801000	Active TSS	Fetal Intestine Small	intestine
14	chr3:154798200-154800000	Active TSS	Brain Anterior Caudate	brain
15	chr3:154798200-154808600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:154798200-154812600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr3:154798600-154803800	Weak transcription	Right Atrium	heart
18	chr3:154798800-154800400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr3:154798800-154800600	Active TSS	Duodenum Smooth Muscle	Duodenum
20	chr3:154798800-154801200	Active TSS	Fetal Intestine Large	intestine
21	chr3:154798800-154801800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr3:154798800-154807200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:154798800-154818800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr3:154799000-154799600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr3:154799000-154799600	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr3:154799000-154799800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:154799000-154799800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr3:154799000-154800200	Active TSS	Primary B cells from cord blood	blood
29	chr3:154799000-154800400	Active TSS	Thymus	Thymus
30	chr3:154799000-154801200	Enhancers	Liver	Liver
31	chr3:154799000-154802400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr3:154799000-154805400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr3:154799000-154818600	Weak transcription	Placenta	Placenta
34	chr3:154799000-154818600	Weak transcription	HSMMtube	muscle
35	chr3:154799000-154819400	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr3:154799200-154799600	Active TSS	Adipose Nuclei	Adipose
37	chr3:154799200-154799600	Enhancers	HMEC	breast
38	chr3:154799200-154799600	Enhancers	HSMM	muscle
39	chr3:154799200-154799800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
40	chr3:154799200-154799800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr3:154799200-154799800	Active TSS	Fetal Thymus	thymus
42	chr3:154799200-154800000	Enhancers	H1 Cell Line	embryonic stem cell
43	chr3:154799200-154800000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr3:154799200-154800200	Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr3:154799200-154800200	Flanking Active TSS	Dnd41	blood
46	chr3:154799200-154800400	Active TSS	Primary hematopoietic stem cells	blood
47	chr3:154799200-154800800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr3:154799200-154803800	Weak transcription	Osteobl	bone
49	chr3:154799400-154799600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
50	chr3:154799400-154799600	Active TSS	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links