Variant report

Variant	rs11156644
Chromosome Location	chr14:21201589-21201590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12892436	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2012838	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2319444	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2873977	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs55882524	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56214359	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6571364	0.82[ASN][1000 genomes]
rs7141656	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8012716	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043923	chr14:20338742-21336425	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
2	nsv541970	chr14:20338742-21336425	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	203 gene(s)	inside rSNPs	diseases
3	esv21015	chr14:20800765-21257878	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
4	nsv1051489	chr14:21026592-21214763	Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
5	nsv1045505	chr14:21168839-21337972	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:21189600-21201600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:21195400-21209400	Weak transcription	Gastric	stomach
3	chr14:21199000-21203800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:21199800-21201600	Weak transcription	Left Ventricle	heart
5	chr14:21200600-21204000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:21200800-21201800	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
7	chr14:21200800-21201800	Enhancers	Placenta	Placenta
8	chr14:21200800-21202000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr14:21200800-21202000	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr14:21201400-21201800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr14:21201400-21201800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
12	chr14:21201400-21201800	Enhancers	Right Atrium	heart
13	chr14:21201400-21203000	Enhancers	Primary B cells from cord blood	blood
14	chr14:21201400-21203200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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