Variant report

Variant	rs11156659
Chromosome Location	chr14:31702336-31702337
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10135901	0.89[EUR][1000 genomes]
rs10137205	0.89[EUR][1000 genomes]
rs12185024	0.89[EUR][1000 genomes]
rs12889534	0.87[EUR][1000 genomes]
rs12893153	0.89[EUR][1000 genomes]
rs12893469	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12895556	0.81[EUR][1000 genomes]
rs12898184	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2378833	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55633656	0.80[EUR][1000 genomes]
rs7161558	0.89[EUR][1000 genomes]
rs72672613	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8014203	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv901587	chr14:31501505-31752664	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1050054	chr14:31501703-31733642	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
3	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11156659	RP11-176H8.1	cis	Muscle Skeletal	GTEx

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31698600-31702600	Weak transcription	Fetal Heart	heart
2	chr14:31699400-31702800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:31699600-31703400	Weak transcription	Placenta	Placenta
4	chr14:31699600-31703800	Enhancers	HepG2	liver
5	chr14:31699600-31707600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:31700600-31702400	Enhancers	Stomach Mucosa	stomach
7	chr14:31701600-31702400	Weak transcription	A549	lung
8	chr14:31701800-31702800	Weak transcription	Hela-S3	cervix
9	chr14:31701800-31708600	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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