Variant report

Variant	rs11156688
Chromosome Location	chr14:32031859-32031860
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr14:32031606-32031912	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:31923625..31927013-chr14:32030157..32032112,3	K562	blood:
2	chr14:32030832..32032361-chr14:32036434..32038297,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257155	TF binding region
ENSG00000258196	TF binding region
ENSG00000203546	Chromatin interaction
ENSG00000129480	Chromatin interaction

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:75)

rs_ID	r²[population]
rs10135539	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10143899	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10144137	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11156690	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11156691	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11156692	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11156694	0.81[AMR][1000 genomes]
rs11156695	0.81[AMR][1000 genomes]
rs11620949	0.83[AMR][1000 genomes]
rs11621036	0.83[AMR][1000 genomes]
rs11622262	0.91[AMR][1000 genomes]
rs11625161	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11625312	0.85[AMR][1000 genomes]
rs11626320	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11627332	0.86[AMR][1000 genomes]
rs11628819	0.83[AMR][1000 genomes]
rs12432746	0.85[AMR][1000 genomes]
rs12434789	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12437209	0.81[AMR][1000 genomes]
rs12881020	0.81[AMR][1000 genomes]
rs12882018	0.88[AMR][1000 genomes]
rs12886052	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12890184	0.82[AMR][1000 genomes]
rs12890288	0.83[AMR][1000 genomes]
rs12894811	0.83[AMR][1000 genomes]
rs17098014	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17098028	0.83[AMR][1000 genomes]
rs17098029	0.83[AMR][1000 genomes]
rs1947004	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1972925	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2165814	0.83[AMR][1000 genomes]
rs2378896	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2378897	0.88[AMR][1000 genomes]
rs34042472	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34782106	0.83[AMR][1000 genomes]
rs34872357	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34984098	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35117360	0.91[AMR][1000 genomes]
rs35316258	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs35620331	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35632753	0.84[AMR][1000 genomes]
rs36024565	0.81[AMR][1000 genomes]
rs36168543	0.83[AMR][1000 genomes]
rs4981105	0.91[AMR][1000 genomes]
rs4981106	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4981857	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4981858	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4981860	0.91[AMR][1000 genomes]
rs4981865	0.83[AMR][1000 genomes]
rs4981868	0.83[AMR][1000 genomes]
rs58110472	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6571434	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6571435	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6571437	0.88[AMR][1000 genomes]
rs6571438	0.83[AMR][1000 genomes]
rs66665255	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67468105	0.91[AMR][1000 genomes]
rs71417966	0.82[AMR][1000 genomes]
rs7142098	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7149572	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7152067	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7152506	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7154174	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8003788	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8009126	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8009531	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8009557	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs8010049	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8010500	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8013916	0.88[AMR][1000 genomes]
rs8015282	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8016490	0.85[AMR][1000 genomes]
rs8016832	0.91[AMR][1000 genomes]
rs8018042	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8022163	0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931935	chr14:31871658-32117666	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv1050774	chr14:31879687-32102906	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv934110	chr14:31887749-32109529	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	nsv934206	chr14:31887749-32257097	ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv564180	chr14:31958566-32368934	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
6	nsv564181	chr14:31958761-32363980	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32031000-32032600	Enhancers	Small Intestine	intestine
2	chr14:32031000-32040000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:32031000-32047000	Weak transcription	Left Ventricle	heart
4	chr14:32031000-32048000	Weak transcription	Esophagus	oesophagus
5	chr14:32031000-32054400	Weak transcription	Pancreas	Pancrea
6	chr14:32031200-32037000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:32031400-32032400	Enhancers	Brain Hippocampus Middle	brain
8	chr14:32031400-32032600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr14:32031400-32033200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr14:32031400-32033400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr14:32031400-32033600	Enhancers	Adipose Nuclei	Adipose
12	chr14:32031400-32035800	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr14:32031400-32039800	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr14:32031400-32040000	Weak transcription	Psoas Muscle	Psoas
15	chr14:32031400-32040000	Weak transcription	Rectal Smooth Muscle	rectum
16	chr14:32031400-32045600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr14:32031400-32046600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr14:32031400-32046600	Weak transcription	Aorta	Aorta
19	chr14:32031400-32046800	Weak transcription	Ovary	ovary
20	chr14:32031400-32050000	Weak transcription	Fetal Brain Female	brain
21	chr14:32031400-32052800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr14:32031400-32069400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr14:32031400-32069600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr14:32031600-32032000	Enhancers	Primary hematopoietic stem cells short term culture	blood
25	chr14:32031600-32032000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr14:32031600-32032200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr14:32031600-32032600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr14:32031600-32032600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr14:32031600-32032600	Weak transcription	Brain Germinal Matrix	brain
30	chr14:32031600-32032800	Enhancers	Primary hematopoietic stem cells	blood
31	chr14:32031600-32032800	Enhancers	Brain Angular Gyrus	brain
32	chr14:32031600-32033200	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr14:32031600-32035000	Weak transcription	Fetal Thymus	thymus
34	chr14:32031600-32035800	Weak transcription	Primary B cells from peripheral blood	blood
35	chr14:32031600-32035800	Weak transcription	Fetal Lung	lung
36	chr14:32031600-32036400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr14:32031600-32036800	Weak transcription	HUVEC	blood vessel
38	chr14:32031600-32037000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr14:32031600-32037000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr14:32031600-32037000	Weak transcription	Thymus	Thymus
41	chr14:32031600-32037000	Weak transcription	NHDF-Ad	bronchial
42	chr14:32031600-32037200	Weak transcription	HSMMtube	muscle
43	chr14:32031600-32038400	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:32031600-32038800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr14:32031600-32039800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr14:32031600-32039800	Weak transcription	Brain Substantia Nigra	brain
47	chr14:32031600-32040000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr14:32031600-32045400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr14:32031600-32045400	Weak transcription	Fetal Intestine Large	intestine
50	chr14:32031600-32045600	Weak transcription	Fetal Muscle Leg	muscle

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