Variant report

Variant	rs11156838
Chromosome Location	chr14:34800468-34800469
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:34799600..34803505-chr14:35015683..35020657,6	K562	blood:
2	chr14:34799049..34803588-chr14:34929796..34932817,6	MCF-7	breast:
3	chr14:34799548..34803609-chr14:34964477..34969425,6	MCF-7	breast:
4	chr14:34793250..34796297-chr14:34798067..34800555,3	K562	blood:
5	chr14:34794253..34796297-chr14:34798522..34800555,2	K562	blood:
6	chr14:34799303..34801132-chr14:34842337..34843937,2	MCF-7	breast:
7	chr14:34799146..34802383-chr14:35022565..35025550,6	K562	blood:
8	chr14:34800052..34803596-chr14:35017115..35019908,4	MCF-7	breast:
9	chr14:34799658..34804397-chr14:34825720..34832179,6	MCF-7	breast:
10	chr14:34800393..34801534-chr14:34967736..34968695,6	MCF-7	breast:
11	chr14:34800025..34801871-chr14:35015919..35018818,2	MCF-7	breast:
12	chr14:34796387..34803256-chr14:34929329..34933926,13	MCF-7	breast:
13	chr14:34800459..34801447-chr14:34834475..34835043,2	MCF-7	breast:
14	chr14:34800085..34801493-chr14:34967404..34968713,17	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000206596	Chromatin interaction
ENSG00000129521	Chromatin interaction
ENSG00000165389	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10129413	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10136010	0.96[EUR][1000 genomes]
rs10146683	0.90[EUR][1000 genomes]
rs10747292	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12435087	1.00[CEU][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1952618	1.00[CEU][hapmap]
rs1958573	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1958574	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1958575	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1958576	1.00[CEU][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1958577	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2383585	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2383586	0.80[AFR][1000 genomes]
rs4246986	1.00[CEU][hapmap];0.88[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4981229	0.96[EUR][1000 genomes]
rs4982165	1.00[CEU][hapmap];0.87[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6571649	1.00[CEU][hapmap];0.88[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7149091	0.87[EUR][1000 genomes]
rs7149706	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs73240826	0.96[EUR][1000 genomes]
rs73240832	0.96[EUR][1000 genomes]
rs8009491	1.00[CEU][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8022686	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	esv34180	chr14:34480514-34838295	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1051104	chr14:34592378-35007083	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv949738	chr14:34616331-34990688	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv564192	chr14:34725233-34996507	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv564193	chr14:34728127-35000188	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv528989	chr14:34744426-34998705	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv2754221	chr14:34783048-34838295	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv901599	chr14:34792079-34828738	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
10	esv2761577	chr14:34792079-34839752	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:34794000-34801200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr14:34800000-34800600	Enhancers	Rectal Smooth Muscle	rectum
3	chr14:34800200-34801000	Enhancers	GM12878-XiMat	blood
4	chr14:34800200-34801200	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr14:34800200-34801600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:34800400-34800800	Enhancers	HepG2	liver
7	chr14:34800400-34801000	Enhancers	Rectal Mucosa Donor 29	rectum
8	chr14:34800400-34801200	Enhancers	Colon Smooth Muscle	Colon
9	chr14:34800400-34801400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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