Variant report

Variant	rs11157085
Chromosome Location	chr14:40153281-40153282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10129410	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs10129508	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10135297	0.82[AFR][1000 genomes]
rs10137748	0.90[EUR][1000 genomes]
rs10137830	0.90[EUR][1000 genomes]
rs10138327	0.92[EUR][1000 genomes]
rs10142887	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10150092	0.90[EUR][1000 genomes]
rs11623929	0.92[EUR][1000 genomes]
rs12890145	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1950634	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1956156	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1956159	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2224233	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915558	chr14:39944831-40165370	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv832775	chr14:40038735-40193559	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1051931	chr14:40130325-40164269	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1046932	chr14:40132136-40268085	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1047288	chr14:40143177-40275545	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:40150800-40153400	Enhancers	iPS-20b Cell Line	embryonic stem cell
2	chr14:40150800-40153600	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr14:40150800-40153800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:40151000-40153400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr14:40151000-40154200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:40151200-40153600	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr14:40151200-40154000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr14:40152400-40153400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:40152400-40153400	Enhancers	NH-A	brain
10	chr14:40152400-40153800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr14:40152600-40153400	Enhancers	Primary T cells from cord blood	blood
12	chr14:40152600-40153400	Enhancers	GM12878-XiMat	blood
13	chr14:40152600-40153600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr14:40152600-40153800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr14:40152800-40153600	Enhancers	Osteobl	bone
16	chr14:40153000-40153400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr14:40153200-40153400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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