Variant report

Variant	rs11158448
Chromosome Location	chr14:63179070-63179071
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1027171	0.83[GIH][hapmap]
rs1041644	0.85[CEU][hapmap];0.92[CHB][hapmap];0.83[CHD][hapmap];0.80[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1889370	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4902176	0.93[CHB][hapmap]
rs7143550	0.86[MEX][hapmap]
rs8017931	0.86[MEX][hapmap]
rs8022524	0.81[MEX][hapmap]
rs869834	0.86[CHB][hapmap];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527675	chr14:63168547-63211280	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11158448	DACT1	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63168200-63182400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr14:63178400-63179400	Active TSS	Spleen	Spleen
3	chr14:63178600-63193000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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