Variant report

Variant	rs11158519
Chromosome Location	chr14:64364585-64364586
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64319630..64322805-chr14:64362843..64364773,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000054654	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12588807	0.86[MEX][hapmap]
rs33976862	0.86[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv564904	chr14:64346190-64416898	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	esv1793389	chr14:64346190-64457224	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv826965	chr14:64360774-64366612	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64337000-64365200	Weak transcription	Fetal Thymus	thymus
2	chr14:64337800-64403800	Weak transcription	Thymus	Thymus
3	chr14:64339400-64366800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr14:64341400-64366800	Weak transcription	Primary T cells from cord blood	blood
5	chr14:64342800-64368400	Weak transcription	Esophagus	oesophagus
6	chr14:64349400-64366600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr14:64349600-64366000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr14:64352800-64366800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
9	chr14:64357800-64364800	Weak transcription	Fetal Intestine Large	intestine
10	chr14:64357800-64366600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr14:64358200-64375800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:64358200-64377600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr14:64358400-64365400	Enhancers	Adipose Nuclei	Adipose
14	chr14:64358400-64366000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr14:64358600-64365800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr14:64358800-64377600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr14:64359000-64366400	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr14:64359000-64367800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr14:64360000-64365000	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr14:64360600-64365600	Enhancers	Fetal Lung	lung
21	chr14:64360600-64382200	Weak transcription	Psoas Muscle	Psoas
22	chr14:64360800-64367000	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr14:64360800-64374200	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr14:64360800-64377800	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr14:64361200-64373600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr14:64361400-64369800	Weak transcription	Colonic Mucosa	Colon
27	chr14:64362600-64365000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr14:64362600-64365000	Enhancers	NH-A	brain
29	chr14:64362600-64365400	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr14:64362600-64365400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr14:64362600-64365600	Enhancers	Stomach Mucosa	stomach
32	chr14:64362800-64364600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
33	chr14:64362800-64364800	Enhancers	Placenta	Placenta
34	chr14:64362800-64365000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:64362800-64365000	Enhancers	Fetal Kidney	kidney
36	chr14:64362800-64365200	Enhancers	Fetal Heart	heart
37	chr14:64362800-64365200	Enhancers	NHDF-Ad	bronchial
38	chr14:64362800-64365200	Enhancers	NHLF	lung
39	chr14:64362800-64365200	Enhancers	Osteobl	bone
40	chr14:64363000-64365000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr14:64363000-64365000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr14:64363000-64365000	Enhancers	Ovary	ovary
43	chr14:64363000-64365000	Enhancers	HSMMtube	muscle
44	chr14:64363000-64365400	Enhancers	Fetal Muscle Leg	muscle
45	chr14:64363000-64365400	Enhancers	Lung	lung
46	chr14:64363200-64365000	Enhancers	Right Atrium	heart
47	chr14:64363200-64365200	Enhancers	Fetal Stomach	stomach
48	chr14:64363200-64366200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
49	chr14:64363400-64364600	Enhancers	HMEC	breast
50	chr14:64363400-64365200	Enhancers	Skeletal Muscle Male	skeletal muscle

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