Variant report

Variant	rs11158686
Chromosome Location	chr14:68194545-68194546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1007284	1.00[ASN][1000 genomes]
rs10483799	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs13343242	1.00[ASN][1000 genomes]
rs57077522	1.00[ASN][1000 genomes]
rs58193384	1.00[ASN][1000 genomes]
rs58220177	1.00[ASN][1000 genomes]
rs7150436	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[ASN][1000 genomes]
rs756473	0.94[LWK][hapmap];0.90[YRI][hapmap];0.83[AFR][1000 genomes]
rs8015333	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902068	chr14:68083133-68204876	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv1042536	chr14:68136913-68343198	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv542122	chr14:68136913-68343198	Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
4	nsv521832	chr14:68141009-68204876	Transcr. at gene 5' and 3' Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68189000-68218800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr14:68189400-68200800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr14:68189600-68195000	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr14:68189600-68196000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr14:68189600-68196400	Weak transcription	Brain Anterior Caudate	brain
6	chr14:68189800-68195000	Weak transcription	Liver	Liver
7	chr14:68189800-68213400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:68192400-68195800	Weak transcription	Pancreas	Pancrea
9	chr14:68193800-68195400	Weak transcription	Stomach Mucosa	stomach
10	chr14:68193800-68199000	Weak transcription	Aorta	Aorta
11	chr14:68194000-68195000	Weak transcription	HepG2	liver
12	chr14:68194000-68195400	Weak transcription	Fetal Intestine Small	intestine
13	chr14:68194000-68195800	Weak transcription	Esophagus	oesophagus
14	chr14:68194000-68202200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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