Variant report

Variant	rs11159567
Chromosome Location	chr14:83418202-83418203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11622321	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11628522	0.92[ASN][1000 genomes]
rs12590431	0.92[ASN][1000 genomes]
rs12590492	0.90[ASN][1000 genomes]
rs12879925	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12889217	0.90[ASN][1000 genomes]
rs1954087	0.92[ASN][1000 genomes]
rs1959734	0.95[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1959735	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv565333	chr14:83397783-83437617	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases
2	nsv456348	chr14:83415104-83443695	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
3	nsv565334	chr14:83415104-83443695	Flanking Active TSS Weak transcription Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:83417000-83418400	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr14:83417000-83418600	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr14:83417200-83418400	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr14:83417400-83418400	Enhancers	H1 Cell Line	embryonic stem cell
5	chr14:83417400-83418400	Enhancers	H9 Cell Line	embryonic stem cell
6	chr14:83418200-83418400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr14:83418200-83418400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links