Variant report

Variant	rs11160839
Chromosome Location	chr14:105648963-105648964
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ESR1	chr14:105648686-105649102	T-47D	breast:	n/a	chr14:105648942-105648957 chr14:105648886-105648901
2	ESR1	chr14:105648783-105649076	T-47D	breast:	n/a	chr14:105648942-105648957 chr14:105648886-105648901
3	ESR1	chr14:105648797-105649062	T-47D	breast:	n/a	chr14:105648942-105648957 chr14:105648886-105648901
4	ZNF263	chr14:105648880-105649572	HEK293-T-REx	kidney:	n/a	n/a
5	ESR1	chr14:105648713-105649106	T-47D	breast:	n/a	chr14:105648942-105648957 chr14:105648886-105648901

No.	Distal block	Cell Line	Cell type
1	chr14:105647019..105649589-chr14:105780411..105782070,2	MCF-7	breast:
2	chr14:105644378..105646118-chr14:105647825..105650297,2	MCF-7	breast:
3	chr14:105647877..105649605-chr14:105663025..105665566,2	MCF-7	breast:
4	chr14:105647774..105650762-chr14:105651625..105655733,5	MCF-7	breast:
5	chr14:105556806..105557482-chr14:105648408..105649374,2	K562	blood:
6	chr14:105647951..105651045-chr14:105657056..105659475,3	MCF-7	breast:
7	chr14:105631465..105635896-chr14:105645452..105649219,9	MCF-7	breast:
8	chr14:105642956..105644640-chr14:105647161..105649743,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000257622	TF binding region
NUDT14	TF binding region
ENSG00000183828	Chromatin interaction
ENSG00000184916	Chromatin interaction
ENSG00000185024	Chromatin interaction
ENSG00000179364	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10139450	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10139596	0.92[CEU][hapmap];0.87[CHB][hapmap];0.97[EUR][1000 genomes]
rs10140111	0.92[CEU][hapmap];0.88[CHB][hapmap];0.97[EUR][1000 genomes]
rs10873555	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10873556	0.81[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs11160836	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11160838	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625862	0.92[CEU][hapmap];0.91[EUR][1000 genomes]
rs11625865	0.92[CEU][hapmap];0.87[CHB][hapmap];0.94[EUR][1000 genomes]
rs11844119	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11844206	0.97[EUR][1000 genomes]
rs11848499	0.81[EUR][1000 genomes]
rs1882845	0.85[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1882848	0.92[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2003181	0.96[EUR][1000 genomes]
rs2072673	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2072674	0.81[EUR][1000 genomes]
rs2072675	0.84[CEU][hapmap];0.87[CHB][hapmap];0.82[EUR][1000 genomes]
rs2238287	0.84[ASN][1000 genomes]
rs2239285	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3759782	0.96[EUR][1000 genomes]
rs3784234	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3784235	0.96[EUR][1000 genomes]
rs3784236	0.82[EUR][1000 genomes]
rs3784237	0.83[EUR][1000 genomes]
rs3784238	0.83[EUR][1000 genomes]
rs3825761	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3825763	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4983589	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4983590	0.92[CEU][hapmap];0.87[CHB][hapmap];0.96[EUR][1000 genomes]
rs66956754	0.81[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs7151594	0.92[CEU][hapmap];0.84[CHB][hapmap];0.97[EUR][1000 genomes]
rs8017877	0.97[EUR][1000 genomes]
rs880616	0.92[CEU][hapmap];0.87[CHB][hapmap];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:51 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv1052190	chr14:105423761-105722653	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases
7	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
8	nsv456458	chr14:105435649-105690092	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
9	nsv566150	chr14:105435649-105690092	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
10	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
11	nsv902425	chr14:105463936-105690092	Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
12	nsv9175	chr14:105496509-105688941	Enhancers Strong transcription Bivalent/Poised TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
13	esv2758369	chr14:105513346-105803170	Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
14	esv2760014	chr14:105513346-105803170	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
15	nsv902430	chr14:105587644-105682527	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
16	nsv902431	chr14:105587644-105685865	Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
17	nsv902432	chr14:105587644-105690092	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
18	esv1797182	chr14:105590971-105696174	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
19	esv1836064	chr14:105590971-105696174	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
20	nsv456464	chr14:105591377-105654606	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
21	nsv456465	chr14:105591377-105654606	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
22	nsv566156	chr14:105591377-105654606	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
23	nsv902433	chr14:105596054-105719306	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
24	nsv902434	chr14:105602619-105654606	ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
25	nsv902435	chr14:105602619-105654606	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
26	nsv902436	chr14:105602619-105672794	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
27	nsv902437	chr14:105602619-105679055	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
28	nsv902438	chr14:105602619-105682527	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
29	nsv902439	chr14:105602619-105690092	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
30	nsv902440	chr14:105602619-105699630	Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
31	nsv902441	chr14:105602619-105803170	Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
32	nsv902442	chr14:105602619-105803170	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
33	esv1817919	chr14:105605199-105803170	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
34	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
35	nsv902447	chr14:105608564-105654606	Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
36	nsv817646	chr14:105615648-105654606	Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
37	nsv456466	chr14:105615648-105685865	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
38	nsv456467	chr14:105615648-105685865	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
39	nsv566159	chr14:105615648-105685865	Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
40	nsv902448	chr14:105617042-105682527	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
41	nsv902449	chr14:105617891-105682527	Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
42	nsv566160	chr14:105617891-105685865	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
43	nsv902450	chr14:105624693-105682527	Bivalent Enhancer Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
44	nsv902451	chr14:105624693-105690092	Bivalent/Poised TSS Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
45	nsv902452	chr14:105625743-105654606	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
46	nsv902453	chr14:105625743-105660766	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
47	nsv902454	chr14:105633499-105690092	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
48	nsv902455	chr14:105633499-105699630	Genic enhancers Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
49	nsv902456	chr14:105636112-105690092	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
50	esv3337768	chr14:105639956-105667348	Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs11160839	NUDT14	cis	lesional skin	skin_eQTL
rs11160839	NUDT14	cis	Temporal Cortex	GTEx
rs11160839	NUDT14	cis	multi-tissue	Pritchard
rs11160839	NUDT14	cis	Frontal Cortex	GTEx
rs11160839	NUDT14	Cis_1M	lymphoblastoid	RTeQTL
rs11160839	NUDT14	cis	normal skin	skin_eQTL

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105645400-105649200	Enhancers	Spleen	Spleen
2	chr14:105646400-105649400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr14:105646800-105649000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr14:105647200-105649200	Enhancers	Primary B cells from cord blood	blood
5	chr14:105647200-105649400	Enhancers	Primary hematopoietic stem cells	blood
6	chr14:105647200-105649600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr14:105647200-105649600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr14:105647400-105649200	Enhancers	Primary B cells from peripheral blood	blood
9	chr14:105647400-105649400	Enhancers	Primary T helper naive cells from peripheral blood	blood
10	chr14:105647400-105649400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr14:105647400-105649600	Enhancers	Placenta	Placenta
12	chr14:105647600-105649000	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr14:105647600-105649600	Enhancers	Primary T cells from cord blood	blood
14	chr14:105647800-105649200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
15	chr14:105648000-105649000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr14:105648000-105649000	Enhancers	Left Ventricle	heart
17	chr14:105648000-105649000	Enhancers	Psoas Muscle	Psoas
18	chr14:105648000-105649200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr14:105648000-105649400	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
20	chr14:105648000-105649400	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
21	chr14:105648000-105649400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
22	chr14:105648000-105649400	Enhancers	Right Ventricle	heart
23	chr14:105648000-105649600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr14:105648000-105649600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:105648000-105649600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:105648000-105650000	Weak transcription	K562	blood
27	chr14:105648000-105659800	Weak transcription	Right Atrium	heart
28	chr14:105648200-105649000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:105648200-105649000	Enhancers	Esophagus	oesophagus
30	chr14:105648200-105649000	Bivalent Enhancer	Fetal Thymus	thymus
31	chr14:105648200-105649000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr14:105648200-105649200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
33	chr14:105648200-105649200	Enhancers	Colonic Mucosa	Colon
34	chr14:105648200-105649200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
35	chr14:105648200-105649400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
36	chr14:105648200-105649400	Enhancers	Primary T helper cells fromperipheralblood	blood
37	chr14:105648200-105649600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
38	chr14:105648400-105649000	Enhancers	Adipose Nuclei	Adipose
39	chr14:105648400-105649400	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr14:105648400-105649400	Enhancers	HSMMtube	muscle
41	chr14:105648400-105649600	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr14:105648400-105650600	Weak transcription	A549	lung
43	chr14:105648400-105651600	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr14:105648400-105652400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr14:105648400-105653400	Weak transcription	Pancreas	Pancrea
46	chr14:105648600-105649000	Enhancers	Lung	lung
47	chr14:105648600-105651200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr14:105648800-105649000	Enhancers	Stomach Smooth Muscle	stomach
49	chr14:105648800-105649000	Flanking Bivalent TSS/Enh	HepG2	liver
50	chr14:105648800-105649600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links