Variant report

Variant	rs11160858
Chromosome Location	chr14:106095720-106095721
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10137699	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11160857	0.92[ASN][1000 genomes]
rs11622374	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2003803	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2003804	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28572080	0.90[EUR][1000 genomes]
rs3923867	0.83[AFR][1000 genomes]
rs4983482	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61986375	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7153753	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7154746	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7492292	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7494106	0.84[AFR][1000 genomes]
rs7494129	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7494551	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7494643	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106090000-106097200	Weak transcription	Esophagus	oesophagus
2	chr14:106093600-106098600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:106093800-106097600	Enhancers	Primary B cells from peripheral blood	blood
4	chr14:106095000-106098400	Weak transcription	Liver	Liver
5	chr14:106095200-106096000	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
6	chr14:106095400-106096200	Enhancers	Spleen	Spleen
7	chr14:106095600-106095800	Enhancers	Lung	lung
8	chr14:106095600-106096000	Bivalent Enhancer	Placenta	Placenta
9	chr14:106095600-106096400	Enhancers	Primary B cells from cord blood	blood
10	chr14:106095600-106096600	Enhancers	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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