Variant report

Variant	rs111613083
Chromosome Location	chr4:26317254-26317255
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:14)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:14 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SETDB1	chr4:26317032-26317566	U2OS	brain:	n/a	n/a
2	CTCF	chr4:26317220-26317286	Lung_OC	lung:	n/a	n/a
3	CBX3	chr4:26317247-26317535	K562	blood:	n/a	n/a
4	TRIM28	chr4:26317105-26317593	K562	blood:	n/a	n/a
5	FOXA1	chr4:26316905-26317311	HepG2	liver:	n/a	n/a
6	EP300	chr4:26316932-26317272	HepG2	liver:	n/a	n/a
7	CBX3	chr4:26317172-26317561	K562	blood:	n/a	n/a
8	TCF12	chr4:26316965-26317287	HepG2	liver:	n/a	n/a
9	ZNF143	chr4:26317252-26317404	H1-hESC	embryonic stem cell:	n/a	n/a
10	SP1	chr4:26316917-26317405	HepG2	liver:	n/a	n/a
11	KAP1	chr4:26317147-26317503	HEK293	kidney:	n/a	n/a
12	KAP1	chr4:26317064-26317552	K562	blood:	n/a	n/a
13	RXRA	chr4:26316921-26317307	HepG2	liver:	n/a	n/a
14	KAP1	chr4:26317196-26317380	U2OS	brain:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26315665..26317783-chr4:26319745..26322175,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3414979	chr4:26317104-26319302	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26301600-26320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26309600-26320600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:26316600-26320400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:26317000-26317400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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