Variant report

Variant	rs11161466
Chromosome Location	chr1:85303801-85303802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11161467	1.00[ASW][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.85[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12062882	0.81[MKK][hapmap]
rs12083676	1.00[MEX][hapmap];1.00[AMR][1000 genomes]
rs1359607	0.82[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830448	chr1:85294094-85491110	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:85289400-85330800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:85296600-85312800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:85299600-85305200	Weak transcription	Pancreas	Pancrea
4	chr1:85300600-85304600	Weak transcription	Liver	Liver
5	chr1:85301200-85305600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:85301200-85306200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:85301400-85306200	Weak transcription	Fetal Heart	heart
8	chr1:85301400-85308600	Weak transcription	Stomach Mucosa	stomach
9	chr1:85301600-85306000	Weak transcription	HMEC	breast
10	chr1:85301600-85306600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:85301600-85307400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr1:85301600-85307400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:85302000-85306400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:85302400-85306600	Weak transcription	NHEK	skin
15	chr1:85303800-85304000	ZNF genes & repeats	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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