Variant report

Variant rs1116194
Chromosome Location chr19:28238570-28238571
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:24 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:28223600-28238800 ZNF genes & repeats Fetal Brain Female brain
2 chr19:28227800-28241200 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr19:28237400-28238600 Enhancers Fetal Heart heart
4 chr19:28237400-28239200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
5 chr19:28237800-28242200 Weak transcription HSMMtube muscle
6 chr19:28238000-28238600 Bivalent/Poised TSS ES-I3 Cell Line embryonic stem cell
7 chr19:28238000-28241200 Weak transcription Brain Cingulate Gyrus brain
8 chr19:28238200-28238600 Enhancers Primary hematopoietic stem cells short term culture blood
9 chr19:28238200-28238600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
10 chr19:28238200-28238600 Weak transcription Lung lung
11 chr19:28238200-28238600 Enhancers Ovary ovary
12 chr19:28238200-28238800 Enhancers Stomach Smooth Muscle stomach
13 chr19:28238200-28239600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
14 chr19:28238200-28240400 Weak transcription Cortex derived primary cultured neurospheres brain
15 chr19:28238200-28241800 Weak transcription Brain Anterior Caudate brain
16 chr19:28238200-28242200 Weak transcription Left Ventricle heart
17 chr19:28238200-28242600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
18 chr19:28238200-28242600 Weak transcription Psoas Muscle Psoas
19 chr19:28238200-28243000 Weak transcription Brain Substantia Nigra brain
20 chr19:28238200-28243400 Weak transcription Colon Smooth Muscle Colon
21 chr19:28238400-28238600 Bivalent Enhancer hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
22 chr19:28238400-28238600 Bivalent Enhancer HUES48 Cell Line embryonic stem cell
23 chr19:28238400-28238800 Bivalent Enhancer iPS-18 Cell Line embryonic stem cell
24 chr19:28238400-28238800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell

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