Variant report

Variant	rs11162083
Chromosome Location	chr1:76588369-76588370
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11162084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12123144	0.82[JPT][hapmap]
rs12138975	1.00[CHB][hapmap]
rs12141557	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12143779	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335741	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1763465	1.00[JPT][hapmap]
rs1889751	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs60395474	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6702844	1.00[JPT][hapmap];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998499	chr1:76361784-76598712	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871862	chr1:76525783-76598209	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv522056	chr1:76573614-76598209	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76557400-76605800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:76557600-76588800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:76575400-76606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr1:76576400-76591000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
6	chr1:76577000-76590800	Weak transcription	Brain Substantia Nigra	brain
7	chr1:76579400-76590800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr1:76579800-76590800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:76581800-76596200	Weak transcription	Fetal Intestine Large	intestine
10	chr1:76583400-76590200	Weak transcription	Brain Hippocampus Middle	brain
11	chr1:76583600-76589800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:76585800-76588600	Enhancers	Fetal Heart	heart
13	chr1:76586400-76588400	Enhancers	Fetal Lung	lung
14	chr1:76586400-76590000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr1:76587000-76588400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:76587000-76588600	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr1:76587000-76590200	Enhancers	Lung	lung
18	chr1:76587200-76590800	Weak transcription	Brain Anterior Caudate	brain
19	chr1:76587600-76588400	Enhancers	Right Ventricle	heart
20	chr1:76587600-76589800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr1:76587800-76590200	Weak transcription	Fetal Kidney	kidney
22	chr1:76587800-76591600	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr1:76587800-76592400	Weak transcription	Gastric	stomach
24	chr1:76587800-76593400	Weak transcription	Stomach Smooth Muscle	stomach
25	chr1:76587800-76602800	Weak transcription	Right Atrium	heart
26	chr1:76588000-76588400	Weak transcription	Aorta	Aorta
27	chr1:76588000-76588400	Enhancers	Psoas Muscle	Psoas
28	chr1:76588000-76589200	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr1:76588200-76589000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr1:76588200-76615600	Weak transcription	Left Ventricle	heart

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