Variant report

Variant	rs11162086
Chromosome Location	chr1:76601214-76601215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12140157	0.81[JPT][hapmap]
rs12142643	0.81[JPT][hapmap]
rs1335738	0.84[CHB][hapmap]
rs289688	0.84[CHB][hapmap];0.83[CHD][hapmap]
rs289691	0.84[CHB][hapmap];0.83[CHD][hapmap]
rs289697	0.89[CHD][hapmap];0.93[JPT][hapmap];0.89[ASN][1000 genomes]
rs3011996	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs3843263	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs427589	0.84[CHB][hapmap];0.85[CHD][hapmap]
rs6683724	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7548049	0.81[CEU][hapmap];0.81[JPT][hapmap]
rs901490	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv947432	chr1:76591253-76601907	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76557400-76605800	Weak transcription	Fetal Intestine Small	intestine
2	chr1:76575400-76606000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr1:76576600-76620000	Weak transcription	Primary B cells from cord blood	blood
4	chr1:76587800-76602800	Weak transcription	Right Atrium	heart
5	chr1:76588200-76615600	Weak transcription	Left Ventricle	heart
6	chr1:76591200-76607800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:76591800-76601400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:76592000-76601400	Weak transcription	Brain Anterior Caudate	brain
9	chr1:76592600-76610800	Weak transcription	Fetal Kidney	kidney
10	chr1:76592800-76605800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr1:76593000-76608200	Weak transcription	Fetal Lung	lung
12	chr1:76594000-76601600	Weak transcription	Brain Hippocampus Middle	brain
13	chr1:76594200-76601400	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr1:76594200-76601400	Weak transcription	Brain Substantia Nigra	brain
15	chr1:76594200-76607400	Weak transcription	Fetal Brain Female	brain
16	chr1:76594600-76615400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr1:76595600-76602400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr1:76598600-76609800	Weak transcription	Fetal Stomach	stomach
19	chr1:76599800-76620200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr1:76601200-76603000	Enhancers	Brain Angular Gyrus	brain
21	chr1:76601200-76603000	Enhancers	Brain Cingulate Gyrus	brain
22	chr1:76601200-76603400	Weak transcription	Psoas Muscle	Psoas
23	chr1:76601200-76604600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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