Variant report

Variant	rs11162119
Chromosome Location	chr1:76779789-76779790
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60815815	1.00[EUR][1000 genomes]
rs72992611	1.00[EUR][1000 genomes]
rs7515337	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv534168	chr1:76718950-77039352	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1006776	chr1:76777323-76899975	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76755800-76783000	Weak transcription	Fetal Lung	lung
2	chr1:76774200-76796400	Weak transcription	Fetal Stomach	stomach
3	chr1:76775400-76796400	Weak transcription	Brain Substantia Nigra	brain
4	chr1:76778000-76782000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr1:76778400-76780200	Enhancers	Fetal Heart	heart
6	chr1:76778400-76783400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:76779000-76780600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr1:76779200-76779800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:76779200-76779800	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr1:76779200-76780200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr1:76779200-76780600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr1:76779400-76779800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr1:76779400-76780000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr1:76779400-76780600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:76779600-76779800	Enhancers	Brain Hippocampus Middle	brain
16	chr1:76779600-76780000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr1:76779600-76780600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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