Variant report

Variant	rs11162308
Chromosome Location	chr1:77752622-77752623
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2177430	1.00[CEU][hapmap]
rs2653470	1.00[CEU][hapmap]
rs2799565	1.00[CEU][hapmap]
rs72998433	0.84[AFR][1000 genomes]
rs839807	1.00[CEU][hapmap]
rs839812	1.00[CEU][hapmap]
rs839819	1.00[CEU][hapmap]
rs839833	1.00[CEU][hapmap]
rs839837	1.00[CEU][hapmap]
rs839838	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005183	chr1:77728990-77949309	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv535010	chr1:77728990-77949309	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv932557	chr1:77730247-77958687	Flanking Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77749000-77779200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:77749200-77754800	Weak transcription	HSMMtube	muscle
3	chr1:77749200-77778400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:77749400-77754600	Weak transcription	Osteobl	bone
5	chr1:77749400-77755600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:77749400-77781600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr1:77749800-77754000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:77749800-77768800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr1:77750000-77753800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:77750000-77753800	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr1:77750000-77757400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr1:77750200-77753400	Weak transcription	Primary T cells from cord blood	blood
13	chr1:77750400-77754000	Weak transcription	Brain Angular Gyrus	brain
14	chr1:77750600-77753400	Enhancers	Brain Substantia Nigra	brain
15	chr1:77750600-77754400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr1:77750600-77772400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr1:77750800-77753200	Weak transcription	Brain Anterior Caudate	brain
18	chr1:77750800-77768200	Weak transcription	Primary T helper cells PMA-I stimulated	--
19	chr1:77751000-77757400	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr1:77751000-77767600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr1:77751200-77754000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr1:77751200-77757800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:77751400-77754600	Weak transcription	NHLF	lung
24	chr1:77751400-77764600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr1:77751600-77753800	Weak transcription	HUVEC	blood vessel
26	chr1:77752200-77756400	Weak transcription	Brain Hippocampus Middle	brain
27	chr1:77752600-77753400	Strong transcription	NHDF-Ad	bronchial
28	chr1:77752600-77757200	Strong transcription	HSMM	muscle

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