Variant report

Variant	rs11163933
Chromosome Location	chr1:84728627-84728628
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10518302	0.81[AMR][1000 genomes]
rs11163923	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[MEX][hapmap];0.86[AMR][1000 genomes]
rs11163934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11807612	0.82[AMR][1000 genomes]
rs11808517	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs11810942	0.82[AMR][1000 genomes]
rs12088543	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17131413	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7534825	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830414	chr1:84636738-84824651	Weak transcription Strong transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv830426	chr1:84704924-84856229	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11163933	PRKACB	cis	lymphoblastoid	seeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84727000-84729200	Weak transcription	Pancreas	Pancrea
2	chr1:84727000-84731000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr1:84727000-84732000	Weak transcription	Fetal Intestine Large	intestine
4	chr1:84727000-84732000	Weak transcription	Small Intestine	intestine
5	chr1:84727000-84732200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr1:84727200-84732000	Weak transcription	Fetal Intestine Small	intestine
7	chr1:84727400-84731600	Weak transcription	Stomach Mucosa	stomach
8	chr1:84727400-84734600	Weak transcription	A549	lung
9	chr1:84727800-84730600	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr1:84728400-84728800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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