Variant report

Variant	rs1116418
Chromosome Location	chr8:78619510-78619511
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10087157	0.85[EUR][1000 genomes]
rs1039858	0.87[EUR][1000 genomes]
rs12334946	0.85[EUR][1000 genomes]
rs12334948	0.85[EUR][1000 genomes]
rs1397103	0.85[EUR][1000 genomes]
rs1510122	0.85[EUR][1000 genomes]
rs1510123	0.85[EUR][1000 genomes]
rs1510124	0.85[EUR][1000 genomes]
rs1519351	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1519352	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1519361	0.82[ASN][1000 genomes]
rs2063336	0.85[EUR][1000 genomes]
rs2063337	0.85[EUR][1000 genomes]
rs2221742	0.85[EUR][1000 genomes]
rs6998256	0.84[EUR][1000 genomes]
rs6998776	0.84[EUR][1000 genomes]
rs7005485	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7006306	0.85[EUR][1000 genomes]
rs7016172	0.85[EUR][1000 genomes]
rs7016476	0.85[EUR][1000 genomes]
rs9298303	0.88[EUR][1000 genomes]
rs9785092	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033669	chr8:78414508-78704839	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1016506	chr8:78414508-78750343	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv539650	chr8:78414508-78750343	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv2752462	chr8:78492584-78669157	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1027584	chr8:78539823-78806136	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1021008	chr8:78540652-78902770	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv539651	chr8:78540652-78902770	Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv891053	chr8:78612055-78768174	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:78619000-78620000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr8:78619200-78620400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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