Variant report

Variant	rs111642633
Chromosome Location	chr21:15429104-15429105
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058202	chr21:14706767-15628668	Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv1067433	chr21:14736298-15507502	Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
3	nsv1055396	chr21:14756514-15507502	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
4	nsv1062639	chr21:14775729-15507502	Enhancers ZNF genes & repeats Strong transcription Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	32 gene(s)	inside rSNPs	diseases
5	nsv587015	chr21:14957973-15448560	Genic enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	diseases
6	nsv1058072	chr21:15372509-15568171	Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv962721	chr21:15407136-15431964	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
8	nsv1056787	chr21:15407504-15530291	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3442739	chr21:15428606-15431454	Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15401800-15452000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr21:15402600-15442400	Weak transcription	Dnd41	blood
3	chr21:15417000-15429600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr21:15423000-15442200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr21:15423400-15455600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr21:15423600-15443000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr21:15425800-15443400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr21:15427000-15429400	Enhancers	Pancreas	Pancrea
9	chr21:15427000-15431400	Enhancers	Esophagus	oesophagus
10	chr21:15427000-15432000	ZNF genes & repeats	Fetal Stomach	stomach
11	chr21:15427000-15433000	ZNF genes & repeats	Fetal Brain Female	brain
12	chr21:15427200-15430200	Enhancers	Rectal Smooth Muscle	rectum
13	chr21:15427200-15431200	Enhancers	Hela-S3	cervix
14	chr21:15427200-15436200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr21:15427800-15430000	Enhancers	Spleen	Spleen
16	chr21:15427800-15431200	Enhancers	Stomach Smooth Muscle	stomach
17	chr21:15428200-15436000	Weak transcription	Right Atrium	heart
18	chr21:15428400-15430000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr21:15428400-15430400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr21:15428800-15429600	Enhancers	Gastric	stomach
21	chr21:15428800-15430800	ZNF genes & repeats	Fetal Adrenal Gland	Adrenal Gland
22	chr21:15428800-15431000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr21:15428800-15432200	ZNF genes & repeats	Brain Germinal Matrix	brain
24	chr21:15428800-15449000	Weak transcription	Fetal Lung	lung
25	chr21:15429000-15429400	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr21:15429000-15429400	ZNF genes & repeats	Lung	lung
27	chr21:15429000-15430600	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr21:15429000-15431800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links