Variant report

Variant	rs11164310
Chromosome Location	chr1:102310443-102310444
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11805492	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1445223	0.89[ASN][1000 genomes]
rs4908195	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522921	chr1:102170295-102876392	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv522156	chr1:102309649-102421714	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:102268400-102311200	Weak transcription	Fetal Intestine Large	intestine
2	chr1:102294400-102311200	Weak transcription	Fetal Intestine Small	intestine
3	chr1:102307600-102312400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:102309000-102312400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:102309200-102312400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:102309600-102311800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:102309600-102311800	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:102309800-102312200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:102310000-102311000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:102310000-102312200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:102310000-102312200	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr1:102310000-102312200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr1:102310000-102312400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr1:102310000-102312400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr1:102310200-102311200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:102310200-102312200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr1:102310200-102312200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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