Variant report

Variant	rs11165281
Chromosome Location	chr1:95429780-95429781
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:95428163..95430092-chr1:95432273..95433856,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12030774	0.84[JPT][hapmap]
rs12092678	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4630158	0.92[JPT][hapmap];0.83[ASN][1000 genomes]
rs6672045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7554204	1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs11165281	GCLM	cis	parietal	SCAN
rs11165281	DNTTIP2	cis	parietal	SCAN
rs11165281	CDC7	cis	cerebellum	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:95422000-95450800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:95428600-95429800	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:95428800-95431400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:95428800-95432200	Weak transcription	Pancreas	Pancrea
5	chr1:95428800-95432600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:95428800-95436400	Weak transcription	Lung	lung
7	chr1:95428800-95439200	Weak transcription	Aorta	Aorta
8	chr1:95429000-95429800	Enhancers	Primary B cells from cord blood	blood
9	chr1:95429000-95429800	Enhancers	Primary B cells from peripheral blood	blood
10	chr1:95429000-95429800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr1:95429000-95429800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr1:95429000-95429800	Enhancers	HepG2	liver
13	chr1:95429000-95430000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:95429000-95436200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:95429000-95436200	Weak transcription	HSMM	muscle
16	chr1:95429000-95436400	Weak transcription	Fetal Kidney	kidney
17	chr1:95429000-95436400	Weak transcription	HSMMtube	muscle
18	chr1:95429000-95437600	Weak transcription	Right Ventricle	heart
19	chr1:95429000-95439800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr1:95429000-95467600	Weak transcription	Stomach Smooth Muscle	stomach
21	chr1:95429200-95429800	Enhancers	Liver	Liver
22	chr1:95429200-95429800	Enhancers	Ovary	ovary
23	chr1:95429200-95429800	Enhancers	Right Atrium	heart
24	chr1:95429200-95430000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr1:95429200-95432400	Weak transcription	HUVEC	blood vessel
26	chr1:95429200-95436400	Weak transcription	Fetal Muscle Leg	muscle
27	chr1:95429200-95440200	Weak transcription	Fetal Intestine Small	intestine
28	chr1:95429600-95429800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr1:95429600-95429800	Enhancers	Spleen	Spleen
30	chr1:95429600-95437600	Weak transcription	Fetal Muscle Trunk	muscle

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