The 2.0 version of rSNPBase

Variant report

Variant rs11165899
Chromosome Location chr1:98059803-98059804
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:56 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:97998600-98063800 Weak transcription Right Ventricle heart
2 chr1:97999400-98064600 Weak transcription Psoas Muscle Psoas
3 chr1:97999400-98074000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
4 chr1:98001200-98062400 Weak transcription Fetal Lung lung
5 chr1:98002000-98069400 Weak transcription Muscle Satellite Cultured Cells --
6 chr1:98007800-98075800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
7 chr1:98009800-98076800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
8 chr1:98009800-98112200 Weak transcription HSMM muscle
9 chr1:98015200-98062000 Weak transcription Primary T helper naive cells from peripheral blood blood
10 chr1:98020000-98060600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr1:98036800-98064400 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr1:98037200-98060600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
13 chr1:98039600-98060400 Weak transcription Duodenum Mucosa Duodenum
14 chr1:98041800-98074000 Weak transcription Aorta Aorta
15 chr1:98047600-98069000 Weak transcription NHDF-Ad bronchial
16 chr1:98047800-98060200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
17 chr1:98048000-98069400 Weak transcription NHLF lung
18 chr1:98050000-98060800 Strong transcription Primary monocytes fromperipheralblood blood
19 chr1:98050200-98060800 Weak transcription Rectal Smooth Muscle rectum
20 chr1:98050600-98060800 Strong transcription Liver Liver
21 chr1:98050600-98061200 Strong transcription Monocytes-CD14+_RO01746 blood
22 chr1:98051600-98060200 Weak transcription Fetal Stomach stomach
23 chr1:98051600-98076600 Weak transcription Spleen Spleen
24 chr1:98051800-98096000 Weak transcription Left Ventricle heart
25 chr1:98053000-98060800 Strong transcription Breast Myoepithelial Primary Cells Breast
26 chr1:98053000-98061800 Weak transcription Brain Hippocampus Middle brain
27 chr1:98053600-98060000 Strong transcription Primary hematopoietic stem cells blood
28 chr1:98053800-98060800 Strong transcription Primary neutrophils fromperipheralblood blood
29 chr1:98053800-98060800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
30 chr1:98054000-98060400 Weak transcription Primary B cells from peripheral blood blood
31 chr1:98054000-98060800 Strong transcription Primary T helper cells fromperipheralblood blood
32 chr1:98054000-98069000 Weak transcription Brain Substantia Nigra brain
33 chr1:98054200-98060600 Strong transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
34 chr1:98055000-98060400 Weak transcription Primary hematopoietic stem cells short term culture blood
35 chr1:98055200-98065200 Weak transcription Lung lung
36 chr1:98055800-98060400 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
37 chr1:98056200-98060800 Strong transcription Primary T regulatory cells fromperipheralblood blood
38 chr1:98056400-98060800 Strong transcription Primary T helper cells PMA-I stimulated --
39 chr1:98056800-98062200 Weak transcription Primary T helper naive cells fromperipheralblood blood
40 chr1:98056800-98063000 Weak transcription Primary T cells from cord blood blood
41 chr1:98057000-98065000 Weak transcription HMEC breast
42 chr1:98058200-98060000 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:98058200-98061000 Strong transcription Dnd41 blood
44 chr1:98058600-98060200 Strong transcription Primary mononuclear cells fromperipheralblood Blood
45 chr1:98058600-98060600 Strong transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
46 chr1:98058600-98063000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
47 chr1:98059000-98062000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
48 chr1:98059000-98062800 Weak transcription Gastric stomach
49 chr1:98059000-98069600 Weak transcription Duodenum Smooth Muscle Duodenum
50 chr1:98059200-98063800 Weak transcription Primary T killer naive cells fromperipheralblood blood

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Last update: Aug 31, 2015