Variant report

Variant	rs111669163
Chromosome Location	chr4:8501327-8501328
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:8500815..8505571-chr4:8524859..8530536,4	MCF-7	breast:
2	chr4:8499417..8502342-chr4:8505170..8507298,2	MCF-7	breast:
3	chr4:8499557..8501918-chr4:8533819..8536050,2	MCF-7	breast:
4	chr4:8493970..8498267-chr4:8498833..8501951,5	K562	blood:
5	chr4:8500499..8503047-chr4:8505239..8508077,2	K562	blood:
6	chr4:8475299..8477901-chr4:8499421..8502393,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878604	chr4:8315938-8618916	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1002680	chr4:8357163-8721214	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv829854	chr4:8402921-8506407	Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	esv1006500	chr4:8501313-8501329	Weak transcription Bivalent/Poised TSS ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1494833	chr4:8501327-8501349	ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8473600-8501400	Weak transcription	Brain Substantia Nigra	brain
2	chr4:8479200-8501400	Weak transcription	Liver	Liver
3	chr4:8480200-8501400	Weak transcription	Brain Hippocampus Middle	brain
4	chr4:8481400-8501400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:8482200-8501400	Weak transcription	Primary T cells from cord blood	blood
6	chr4:8491000-8501400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:8491000-8505200	Weak transcription	Fetal Brain Female	brain
8	chr4:8495800-8501400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:8496200-8501400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr4:8497000-8504200	Weak transcription	Right Atrium	heart
11	chr4:8499600-8501600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:8500600-8501600	Enhancers	Placenta	Placenta
13	chr4:8501000-8501400	Weak transcription	Fetal Heart	heart
14	chr4:8501000-8501600	ZNF genes & repeats	Pancreas	Pancrea
15	chr4:8501000-8501800	Weak transcription	Ovary	ovary
16	chr4:8501200-8501400	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr4:8501200-8501600	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
18	chr4:8501200-8501600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
19	chr4:8501200-8501600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr4:8501200-8501600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
21	chr4:8501200-8501600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
22	chr4:8501200-8501600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr4:8501200-8501600	ZNF genes & repeats	Esophagus	oesophagus
24	chr4:8501200-8501600	Enhancers	Lung	lung

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