Variant report

Variant	rs1116800
Chromosome Location	chr13:51471032-51471033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1462031	0.80[ASN][1000 genomes]
rs6561597	0.83[ASN][1000 genomes]
rs73186359	0.90[EUR][1000 genomes]
rs8001069	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9526701	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv900078	chr13:51454896-51478716	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51465600-51474600	Weak transcription	Aorta	Aorta
2	chr13:51468400-51471400	Enhancers	Thymus	Thymus
3	chr13:51468800-51472000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:51468800-51472200	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr13:51468800-51472200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr13:51468800-51472200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr13:51469000-51483400	Weak transcription	Fetal Lung	lung
8	chr13:51469200-51471800	Weak transcription	GM12878-XiMat	blood
9	chr13:51469200-51472000	Weak transcription	Fetal Heart	heart
10	chr13:51470200-51472400	Enhancers	Dnd41	blood
11	chr13:51470800-51471600	Enhancers	Fetal Thymus	thymus
12	chr13:51470800-51472400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr13:51471000-51472000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr13:51471000-51472200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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