The 2.0 version of rSNPBase

Variant report

Variant rs11168288
Chromosome Location chr12:48287786-48287787
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:61 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:48262000-48296800 Weak transcription Aorta Aorta
2 chr12:48277200-48289600 Weak transcription Esophagus oesophagus
3 chr12:48277200-48290600 Weak transcription Gastric stomach
4 chr12:48277200-48295000 Weak transcription Rectal Smooth Muscle rectum
5 chr12:48277600-48289000 Weak transcription Hela-S3 cervix
6 chr12:48278400-48289600 Weak transcription Stomach Mucosa stomach
7 chr12:48278600-48287800 Strong transcription NHEK skin
8 chr12:48283000-48287800 Genic enhancers Breast Myoepithelial Primary Cells Breast
9 chr12:48283200-48288400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
10 chr12:48283400-48289600 Weak transcription Primary T helper cells fromperipheralblood blood
11 chr12:48283400-48289800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
12 chr12:48283400-48293200 Weak transcription Primary T helper naive cells from peripheral blood blood
13 chr12:48283600-48290000 Weak transcription Primary T regulatory cells fromperipheralblood blood
14 chr12:48283600-48290400 Weak transcription Fetal Intestine Large intestine
15 chr12:48284000-48289600 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr12:48284800-48288200 Enhancers Primary T helper 17 cells PMA-I stimulated --
17 chr12:48285000-48294400 Weak transcription Right Ventricle heart
18 chr12:48285200-48290000 Strong transcription Fetal Intestine Small intestine
19 chr12:48285400-48289600 Weak transcription Placenta Placenta
20 chr12:48286000-48288200 Strong transcription Primary neutrophils fromperipheralblood blood
21 chr12:48286000-48288400 Genic enhancers Osteobl bone
22 chr12:48286000-48292800 Weak transcription Small Intestine intestine
23 chr12:48286400-48287800 Weak transcription Colonic Mucosa Colon
24 chr12:48286400-48287800 Enhancers NHDF-Ad bronchial
25 chr12:48286600-48287800 Enhancers NHLF lung
26 chr12:48286600-48288000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
27 chr12:48286600-48288400 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
28 chr12:48286600-48288400 Enhancers Foreskin Melanocyte Primary Cells skin01 Skin
29 chr12:48286600-48288400 Enhancers HSMM muscle
30 chr12:48286800-48287800 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
31 chr12:48286800-48290200 Weak transcription Pancreas Pancrea
32 chr12:48286800-48298000 Weak transcription Right Atrium heart
33 chr12:48287000-48288200 Enhancers Muscle Satellite Cultured Cells --
34 chr12:48287000-48288800 Enhancers HSMMtube muscle
35 chr12:48287000-48292000 Genic enhancers HMEC breast
36 chr12:48287000-48293200 Weak transcription Primary T cells from cord blood blood
37 chr12:48287200-48287800 Weak transcription Fetal Thymus thymus
38 chr12:48287200-48290200 Weak transcription Primary T helper naive cells fromperipheralblood blood
39 chr12:48287200-48290200 Strong transcription Monocytes-CD14+_RO01746 blood
40 chr12:48287400-48288000 Transcr. at gene 5' and 3' Duodenum Mucosa Duodenum
41 chr12:48287400-48288400 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
42 chr12:48287400-48288400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
43 chr12:48287400-48288400 Strong transcription Primary mononuclear cells fromperipheralblood Blood
44 chr12:48287400-48288400 Enhancers Fetal Adrenal Gland Adrenal Gland
45 chr12:48287400-48288600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr12:48287400-48288600 Enhancers Spleen Spleen
47 chr12:48287400-48289000 Enhancers Sigmoid Colon Sigmoid Colon
48 chr12:48287400-48290400 Weak transcription Primary monocytes fromperipheralblood blood
49 chr12:48287600-48287800 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
50 chr12:48287600-48288000 Weak transcription Rectal Mucosa Donor 29 rectum

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Last update: Aug 31, 2015