Variant report

Variant	rs11168327
Chromosome Location	chr12:48345975-48345976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:48345272..48347198-chr12:48349693..48351392,2	MCF-7	breast:
2	chr12:48337310..48342034-chr12:48342237..48346016,6	MCF-7	breast:
3	chr12:48290096..48306593-chr12:48332606..48350271,44	MCF-7	breast:
4	chr12:48345662..48347551-chr12:48498551..48500954,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111424	Chromatin interaction
ENSG00000152556	Chromatin interaction
ENSG00000079387	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10783222	0.85[YRI][hapmap]
rs4547172	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11168327	LASS5	cis	parietal	SCAN
rs11168327	RAPGEF3	cis	parietal	SCAN

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:48335800-48346000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr12:48338400-48348800	Enhancers	HMEC	breast
3	chr12:48341200-48347600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr12:48341800-48347600	Weak transcription	Fetal Lung	lung
5	chr12:48342200-48346000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:48342800-48346000	Enhancers	Placenta	Placenta
7	chr12:48342800-48346600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr12:48343800-48347600	Weak transcription	Fetal Intestine Large	intestine
9	chr12:48344000-48347800	Weak transcription	Fetal Intestine Small	intestine
10	chr12:48344200-48346800	Weak transcription	Colonic Mucosa	Colon
11	chr12:48344200-48347600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr12:48344400-48346200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr12:48344400-48346800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr12:48344400-48347200	Weak transcription	Liver	Liver
15	chr12:48344400-48349000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr12:48344600-48346000	Enhancers	Placenta Amnion	Placenta Amnion
17	chr12:48345200-48346000	Bivalent Enhancer	HepG2	liver
18	chr12:48345200-48347800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr12:48345200-48348800	Enhancers	NHEK	skin
20	chr12:48345800-48346000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr12:48345800-48348400	Weak transcription	Duodenum Mucosa	Duodenum

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