Variant report

Variant	rs11169119
Chromosome Location	chr12:50102967-50102968
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:50097894..50103527-chr12:50133840..50136991,8	K562	blood:
2	chr12:50035942..50038224-chr12:50100136..50103040,3	MCF-7	breast:
3	chr12:50096479..50103459-chr12:50133671..50138995,13	K562	blood:
4	chr12:50100220..50104044-chr12:50234202..50236972,3	K562	blood:
5	chr12:50034899..50039875-chr12:50099580..50104040,10	MCF-7	breast:
6	chr12:50099890..50103139-chr12:50133844..50137712,5	MCF-7	breast:
7	chr12:50035440..50045362-chr12:50096806..50104789,13	K562	blood:
8	chr12:50033388..50039946-chr12:50098324..50104633,12	K562	blood:
9	chr12:50015348..50017930-chr12:50100590..50103903,3	K562	blood:

No data

No data

No data

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10047567	1.00[AFR][1000 genomes]
rs10467104	1.00[AFR][1000 genomes]
rs11169030	1.00[AFR][1000 genomes]
rs11169036	1.00[AFR][1000 genomes]
rs11169072	1.00[AFR][1000 genomes]
rs11169077	1.00[AFR][1000 genomes]
rs11169096	1.00[AFR][1000 genomes]
rs12299386	1.00[AFR][1000 genomes]
rs12301239	1.00[AFR][1000 genomes]
rs12310439	1.00[AFR][1000 genomes]
rs12313145	1.00[AFR][1000 genomes]
rs12322413	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045327	chr12:49975040-50551375	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
2	nsv541490	chr12:49975040-50551375	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50101400-50103000	Weak transcription	Right Atrium	heart
2	chr12:50102200-50103000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:50102200-50103400	Weak transcription	K562	blood
4	chr12:50102200-50114600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr12:50102800-50103000	Bivalent Enhancer	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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