Variant report

Variant	rs11169156
Chromosome Location	chr12:50172852-50172853
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:50170142..50172988-chr12:50230634..50232481,2	MCF-7	breast:
2	chr12:50170539..50173499-chr12:50194309..50196084,2	MCF-7	breast:
3	chr12:50170723..50173215-chr12:50235786..50237664,2	MCF-7	breast:
4	chr12:50170135..50173080-chr12:50221067..50223815,3	K562	blood:
5	chr12:50167519..50174148-chr12:50230304..50237815,12	MCF-7	breast:
6	chr12:50134293..50136830-chr12:50171612..50173479,2	K562	blood:
7	chr12:50172187..50173794-chr12:50215810..50217637,2	MCF-7	breast:
8	chr12:50172236..50175576-chr12:50176494..50178771,3	MCF-7	breast:
9	chr12:50172214..50173782-chr12:50187998..50189556,2	MCF-7	breast:
10	chr12:50172716..50175610-chr12:50278346..50281204,2	K562	blood:
11	chr12:50171445..50173628-chr12:50220779..50222982,3	MCF-7	breast:
12	chr12:49995716..49998713-chr12:50171804..50173313,2	MCF-7	breast:
13	chr12:50134733..50136828-chr12:50171979..50173691,2	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
ENSG00000167566	Chromatin interaction
ENSG00000186666	Chromatin interaction
ENSG00000258057	Chromatin interaction
ENSG00000139644	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11169150	0.81[AMR][1000 genomes]
rs11169153	0.89[AMR][1000 genomes]
rs11169154	0.86[AMR][1000 genomes]
rs11169155	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11169160	0.87[AMR][1000 genomes]
rs1470907	0.90[AMR][1000 genomes]
rs3741554	0.81[AMR][1000 genomes]
rs3741555	0.87[AMR][1000 genomes]
rs3813526	0.87[AMR][1000 genomes]
rs897059	0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045327	chr12:49975040-50551375	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases
2	nsv541490	chr12:49975040-50551375	Weak transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	170 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50158800-50181600	Weak transcription	Brain Hippocampus Middle	brain
2	chr12:50159200-50177600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr12:50159400-50178600	Weak transcription	Right Ventricle	heart
4	chr12:50160600-50183400	Weak transcription	Primary T cells from cord blood	blood
5	chr12:50170000-50184800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:50170200-50184400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr12:50170800-50176600	Weak transcription	Fetal Muscle Leg	muscle
8	chr12:50170800-50191200	Weak transcription	Brain Substantia Nigra	brain
9	chr12:50172000-50183400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:50172200-50177200	Weak transcription	Right Atrium	heart
11	chr12:50172200-50177600	Weak transcription	Fetal Thymus	thymus
12	chr12:50172400-50177200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr12:50172400-50177400	Weak transcription	K562	blood
14	chr12:50172400-50177600	Weak transcription	Hela-S3	cervix
15	chr12:50172400-50183800	Weak transcription	Pancreas	Pancrea
16	chr12:50172400-50192600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr12:50172800-50173000	Enhancers	Placenta	Placenta
18	chr12:50172800-50184600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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