Variant report

Variant	rs11169616
Chromosome Location	chr12:39202335-39202336
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10161183	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10444553	0.91[ASN][1000 genomes]
rs10876208	0.88[ASN][1000 genomes]
rs11169482	0.89[EUR][1000 genomes]
rs11169518	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11169519	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11169535	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11169760	0.93[ASN][1000 genomes]
rs11169768	0.95[ASN][1000 genomes]
rs11503917	0.82[AMR][1000 genomes]
rs12300353	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs1400280	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs1400285	0.91[ASN][1000 genomes]
rs1403521	0.99[ASN][1000 genomes]
rs1516558	0.91[ASN][1000 genomes]
rs1523118	0.99[ASN][1000 genomes]
rs1523121	0.93[ASN][1000 genomes]
rs1586373	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2388172	0.91[ASN][1000 genomes]
rs34246358	0.91[ASN][1000 genomes]
rs35749392	0.81[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3803020	0.99[ASN][1000 genomes]
rs3887436	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4384412	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4595586	0.86[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs4768388	0.97[ASN][1000 genomes]
rs56149694	0.95[ASN][1000 genomes]
rs56344858	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7314227	0.95[ASN][1000 genomes]
rs7315271	0.89[EUR][1000 genomes]
rs7957999	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7960901	0.80[AFR][1000 genomes]
rs7978766	0.85[AMR][1000 genomes]
rs7980448	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv676	chr12:39184359-39215822	Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
2	nsv1047623	chr12:39187817-39539939	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39182600-39202800	Weak transcription	Liver	Liver
2	chr12:39184200-39205800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:39200800-39205000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr12:39201200-39208000	Weak transcription	A549	lung
5	chr12:39201600-39208800	Weak transcription	Esophagus	oesophagus
6	chr12:39201800-39205600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr12:39201800-39216600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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