Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10897016	0.87[EUR][1000 genomes]
rs11230188	0.84[EUR][1000 genomes]
rs11230193	0.88[EUR][1000 genomes]
rs11230196	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11230197	0.88[EUR][1000 genomes]
rs11230198	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11230202	0.80[AFR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11230203	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11230212	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11230230	0.81[ASN][1000 genomes]
rs11518558	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12363802	0.87[EUR][1000 genomes]
rs12422193	0.87[EUR][1000 genomes]
rs1426251	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17154687	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1834555	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1869200	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4497428	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4939319	0.88[EUR][1000 genomes]
rs73485316	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7350544	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7929057	0.86[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.96[LWK][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.95[TSI][hapmap];0.88[EUR][1000 genomes]
rs7932904	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1053558	chr11:59979460-60061209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	esv3435505	chr11:60006972-60051885	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1117067	DAK	cis	parietal	SCAN
rs1117067	OR5M9	cis	parietal	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60038600-60039400	Enhancers	GM12878-XiMat	blood

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