Variant report

Variant	rs11171127
Chromosome Location	chr12:39595245-39595246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10876583	0.97[ASN][1000 genomes]
rs11170907	0.92[EUR][1000 genomes]
rs11170998	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11170999	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11171037	0.97[ASN][1000 genomes]
rs11171119	0.97[ASN][1000 genomes]
rs11171126	0.90[ASN][1000 genomes]
rs11171717	1.00[YRI][hapmap]
rs12424223	0.90[EUR][1000 genomes]
rs12424228	0.92[EUR][1000 genomes]
rs4259869	0.83[ASN][1000 genomes]
rs4332558	0.90[EUR][1000 genomes]
rs4448725	0.92[EUR][1000 genomes]
rs4453274	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4633501	0.97[ASN][1000 genomes]
rs61939236	0.95[ASN][1000 genomes]
rs7350605	0.83[ASN][1000 genomes]
rs7953145	0.92[EUR][1000 genomes]
rs7960789	0.92[EUR][1000 genomes]
rs9645817	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832374	chr12:39468434-39630369	Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv899013	chr12:39567945-39732430	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:39595200-39595400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links