Variant report

Variant	rs11172142
Chromosome Location	chr12:57680101-57680102
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:57679728..57681270-chr12:57853291..57855999,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111087	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10876968	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10876971	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10876973	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10876974	0.80[AFR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11172140	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11172155	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11614077	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11830804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12227309	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28473132	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2943692	1.00[CEU][hapmap]
rs2943693	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3204635	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs36050407	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs473465	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs507562	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap]
rs538548	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs567895	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap]
rs6581138	0.85[EUR][1000 genomes]
rs7133572	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7302906	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7963352	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7966846	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7976512	1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:57654800-57705400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:57656600-57682800	Weak transcription	Fetal Brain Male	brain
3	chr12:57662800-57706000	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr12:57667600-57685600	Weak transcription	Fetal Heart	heart
5	chr12:57667600-57687200	Weak transcription	Psoas Muscle	Psoas
6	chr12:57670200-57681400	Strong transcription	Stomach Smooth Muscle	stomach
7	chr12:57670400-57707000	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr12:57670600-57693000	Strong transcription	Fetal Muscle Leg	muscle
9	chr12:57670600-57694400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
10	chr12:57670600-57698600	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr12:57670600-57700000	Strong transcription	Fetal Muscle Trunk	muscle
12	chr12:57671000-57681600	Strong transcription	Brain Germinal Matrix	brain
13	chr12:57671000-57694400	Strong transcription	Adipose Nuclei	Adipose
14	chr12:57671000-57700000	Strong transcription	Liver	Liver
15	chr12:57671200-57690400	Strong transcription	Fetal Brain Female	brain
16	chr12:57671600-57680400	Strong transcription	Left Ventricle	heart
17	chr12:57671600-57692200	Strong transcription	Skeletal Muscle Female	skeletal muscle
18	chr12:57672200-57688400	Weak transcription	Small Intestine	intestine
19	chr12:57672800-57688400	Weak transcription	Colonic Mucosa	Colon
20	chr12:57674200-57682800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr12:57674400-57684600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr12:57674400-57697000	Strong transcription	Placenta	Placenta
23	chr12:57674600-57682600	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr12:57674600-57683200	Weak transcription	Right Ventricle	heart
25	chr12:57674600-57685000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr12:57674600-57686800	Weak transcription	Esophagus	oesophagus
27	chr12:57674600-57693200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr12:57674600-57693600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr12:57674600-57694200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr12:57674600-57697000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr12:57674600-57700000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr12:57674600-57702600	Weak transcription	HUVEC	blood vessel
33	chr12:57674600-57704400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr12:57674800-57680400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr12:57674800-57681200	Weak transcription	GM12878-XiMat	blood
36	chr12:57674800-57681400	Strong transcription	Duodenum Mucosa	Duodenum
37	chr12:57674800-57682400	Strong transcription	Primary hematopoietic stem cells	blood
38	chr12:57674800-57682800	Weak transcription	HSMMtube	muscle
39	chr12:57674800-57685600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr12:57674800-57688400	Weak transcription	NHDF-Ad	bronchial
41	chr12:57674800-57688800	Weak transcription	HMEC	breast
42	chr12:57674800-57691200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr12:57674800-57693600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr12:57674800-57694200	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr12:57674800-57697400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr12:57674800-57697800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr12:57674800-57700000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr12:57674800-57701000	Strong transcription	Primary T cells from cord blood	blood
49	chr12:57675000-57680400	Strong transcription	Primary B cells from peripheral blood	blood
50	chr12:57675000-57681600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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