Variant report

Variant	rs11172461
Chromosome Location	chr12:58481897-58481898
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11172460	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11172466	0.92[ASN][1000 genomes]
rs11172468	0.92[ASN][1000 genomes]
rs11172469	0.92[ASN][1000 genomes]
rs2653860	0.92[ASN][1000 genomes]
rs265568	0.92[ASN][1000 genomes]
rs2659650	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv3502230	chr12:58458209-58490226	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3502241	chr12:58458223-58490223	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2830232	chr12:58470456-58498926	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58475600-58482800	Weak transcription	Fetal Muscle Leg	muscle
2	chr12:58479000-58484200	Weak transcription	Pancreas	Pancrea
3	chr12:58481000-58482000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr12:58481000-58482000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:58481000-58482000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:58481000-58482200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr12:58481000-58482600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr12:58481200-58482000	Enhancers	Right Ventricle	heart
9	chr12:58481200-58482200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:58481200-58486800	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr12:58481600-58482000	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr12:58481800-58482200	Enhancers	Fetal Heart	heart
13	chr12:58481800-58482400	Weak transcription	Psoas Muscle	Psoas
14	chr12:58481800-58482800	Enhancers	Fetal Lung	lung
15	chr12:58481800-58482800	Weak transcription	Left Ventricle	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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