Variant report

Variant rs11172798
Chromosome Location chr12:59283543-59283544
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:96 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:59260600-59284200 Strong transcription HUVEC blood vessel
2 chr12:59261400-59284200 Strong transcription Rectal Mucosa Donor 29 rectum
3 chr12:59261600-59284200 Strong transcription Rectal Mucosa Donor 31 rectum
4 chr12:59262600-59295000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
5 chr12:59264800-59284200 Strong transcription Duodenum Mucosa Duodenum
6 chr12:59265400-59284200 Strong transcription Skeletal Muscle Female skeletal muscle
7 chr12:59266000-59311000 Weak transcription Fetal Thymus thymus
8 chr12:59266200-59284000 Strong transcription Fetal Muscle Trunk muscle
9 chr12:59266400-59284000 Strong transcription Fetal Muscle Leg muscle
10 chr12:59271600-59284600 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
11 chr12:59271600-59284600 Strong transcription Osteobl bone
12 chr12:59271800-59284000 Strong transcription Muscle Satellite Cultured Cells --
13 chr12:59272800-59285800 Weak transcription Placenta Amnion Placenta Amnion
14 chr12:59273600-59287000 Weak transcription Stomach Mucosa stomach
15 chr12:59273800-59289000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
16 chr12:59274800-59283600 Weak transcription Fetal Intestine Small intestine
17 chr12:59274800-59289000 Weak transcription Right Ventricle heart
18 chr12:59275000-59300800 Weak transcription HSMMtube muscle
19 chr12:59275200-59297800 Weak transcription Hela-S3 cervix
20 chr12:59276600-59284000 Strong transcription Skeletal Muscle Male skeletal muscle
21 chr12:59277400-59286000 Weak transcription GM12878-XiMat blood
22 chr12:59277800-59288800 Weak transcription Right Atrium heart
23 chr12:59278200-59284000 Strong transcription Fetal Kidney kidney
24 chr12:59278200-59284000 Strong transcription Sigmoid Colon Sigmoid Colon
25 chr12:59278400-59284000 Strong transcription HSMM muscle
26 chr12:59279000-59286800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr12:59279000-59310800 Weak transcription H1 Cell Line embryonic stem cell
28 chr12:59279200-59290200 Weak transcription Fetal Heart heart
29 chr12:59279200-59309400 Weak transcription ES-I3 Cell Line embryonic stem cell
30 chr12:59279600-59284000 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr12:59279600-59284000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
32 chr12:59279800-59284200 Strong transcription iPS-20b Cell Line embryonic stem cell
33 chr12:59280200-59287400 Weak transcription Psoas Muscle Psoas
34 chr12:59281000-59284000 Strong transcription HepG2 liver
35 chr12:59281000-59289400 Enhancers Cortex derived primary cultured neurospheres brain
36 chr12:59281200-59287400 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
37 chr12:59281400-59283800 Enhancers Brain Cingulate Gyrus brain
38 chr12:59281400-59283800 Enhancers Brain Germinal Matrix brain
39 chr12:59281400-59284000 Strong transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
40 chr12:59281400-59284000 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
41 chr12:59281400-59284000 Strong transcription Colonic Mucosa Colon
42 chr12:59281400-59284000 Genic enhancers HMEC breast
43 chr12:59281400-59284200 Genic enhancers NHEK skin
44 chr12:59281400-59284600 Enhancers Brain Anterior Caudate brain
45 chr12:59281600-59283600 Enhancers Brain Substantia Nigra brain
46 chr12:59281600-59284000 Genic enhancers Breast Myoepithelial Primary Cells Breast
47 chr12:59281600-59284000 Genic enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
48 chr12:59281600-59284200 Enhancers Brain Hippocampus Middle brain
49 chr12:59281600-59284600 Enhancers Brain Angular Gyrus brain
50 chr12:59281800-59284000 Genic enhancers Rectal Smooth Muscle rectum

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