Variant report
| Variant | rs11173321 |
|---|---|
| Chromosome Location | chr12:60496402-60496403 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:60493772..60496447-chr12:60496844..60499476,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs11173356 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11173373 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11173383 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12304677 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12312239 | 1.00[AMR][1000 genomes] |
| rs12316618 | 0.95[AFR][1000 genomes] |
| rs12319220 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17123500 | 1.00[AMR][1000 genomes] |
| rs60145703 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73364880 | 0.95[AFR][1000 genomes] |
| rs73368995 | 1.00[AMR][1000 genomes] |
| rs7957218 | 1.00[AMR][1000 genomes] |
| rs7972243 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1048137 | chr12:60432594-60515455 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription | TF binding regionChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv428591 | chr12:60446360-60631044 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv427913 | chr12:60462443-60569344 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2760273 | chr12:60489188-60561925 | Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv826394 | chr12:60491264-60516940 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:60496000-60498000 | Weak transcription | NHDF-Ad | bronchial |
