Variant report

Variant	rs11173626
Chromosome Location	chr12:61206329-61206330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10082833	0.81[EUR][1000 genomes]
rs1032641	0.83[EUR][1000 genomes]
rs1032642	0.82[EUR][1000 genomes]
rs1032643	0.82[EUR][1000 genomes]
rs1032644	0.82[EUR][1000 genomes]
rs10784067	0.88[EUR][1000 genomes]
rs10784068	0.86[EUR][1000 genomes]
rs10877452	0.83[EUR][1000 genomes]
rs10877453	0.81[EUR][1000 genomes]
rs10877458	0.80[EUR][1000 genomes]
rs11173622	0.81[EUR][1000 genomes]
rs11173625	0.82[EUR][1000 genomes]
rs11173627	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11173628	0.82[EUR][1000 genomes]
rs11173630	0.82[EUR][1000 genomes]
rs11173634	0.82[EUR][1000 genomes]
rs12296661	0.81[EUR][1000 genomes]
rs12298398	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12301122	0.81[EUR][1000 genomes]
rs12320516	0.88[EUR][1000 genomes]
rs12321112	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1353732	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1587345	0.82[EUR][1000 genomes]
rs4758883	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61040712	0.83[EUR][1000 genomes]
rs6581347	0.81[EUR][1000 genomes]
rs6581348	0.80[EUR][1000 genomes]
rs7134059	0.81[EUR][1000 genomes]
rs7301607	0.82[EUR][1000 genomes]
rs73382964	0.82[EUR][1000 genomes]
rs7485220	0.81[EUR][1000 genomes]
rs7486370	0.87[EUR][1000 genomes]
rs7487354	0.81[EUR][1000 genomes]
rs7488590	0.86[EUR][1000 genomes]
rs7488790	0.80[EUR][1000 genomes]
rs7953872	0.81[EUR][1000 genomes]
rs9669114	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047466	chr12:60702221-61521156	Active TSS Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv899139	chr12:61043705-61316609	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv559144	chr12:61054803-61214545	Enhancers ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv826400	chr12:61086823-61240180	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1067599	chr12:61091958-61921447	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv492252	chr12:61091958-61921447	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv1045192	chr12:61099246-61941879	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv559145	chr12:61103562-61315791	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv899140	chr12:61105785-61316609	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv832433	chr12:61110494-61297319	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv559146	chr12:61119266-61315791	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv899141	chr12:61119266-61316609	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
13	nsv526849	chr12:61154009-61253485	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
14	nsv559147	chr12:61154009-61315791	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
15	nsv559148	chr12:61161511-61258329	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	nsv983506	chr12:61196825-61207927	ZNF genes & repeats Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:61206200-61206400	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:61206200-61206400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
3	chr12:61206200-61206400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
4	chr12:61206200-61206400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
5	chr12:61206200-61206400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
6	chr12:61206200-61206400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr12:61206200-61206400	Flanking Bivalent TSS/Enh	Primary T killer memory cells from peripheral blood	blood
8	chr12:61206200-61206400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain

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