Variant report

Variant	rs11174271
Chromosome Location	chr12:62394495-62394496
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:62392186..62394939-chr12:62398107..62400504,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1121705	0.90[ASN][1000 genomes]
rs11836443	0.88[ASN][1000 genomes]
rs11836487	0.81[ASN][1000 genomes]
rs12831463	0.81[ASN][1000 genomes]
rs1373454	0.81[ASN][1000 genomes]
rs1440723	0.81[ASN][1000 genomes]
rs1440724	0.81[ASN][1000 genomes]
rs17125609	0.90[ASN][1000 genomes]
rs17125631	0.90[ASN][1000 genomes]
rs17654373	0.81[ASN][1000 genomes]
rs17705406	0.81[ASN][1000 genomes]
rs34008431	0.81[ASN][1000 genomes]
rs56279780	0.81[ASN][1000 genomes]
rs7314952	0.90[ASN][1000 genomes]
rs9668399	0.81[ASN][1000 genomes]
rs9668407	0.81[ASN][1000 genomes]
rs9668420	0.81[ASN][1000 genomes]
rs9668428	0.81[ASN][1000 genomes]
rs9669003	0.81[ASN][1000 genomes]
rs9669020	0.81[ASN][1000 genomes]
rs9669351	0.81[ASN][1000 genomes]
rs9669783	0.81[ASN][1000 genomes]
rs9669794	0.81[ASN][1000 genomes]
rs9739051	0.81[ASN][1000 genomes]
rs9739059	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3323443	chr12:62392085-62396383	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv559152	chr12:62392548-62395774	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2633161	chr12:62393516-62395086	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv6636	chr12:62393709-62394748	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2028037	chr12:62393773-62394689	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3487986	chr12:62393826-62394601	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3487953	chr12:62393884-62394570	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3487964	chr12:62393891-62394565	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3487997	chr12:62393903-62394524	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv5428	chr12:62393928-62394562	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3487975	chr12:62393946-62394501	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3488008	chr12:62393960-62394497	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv1849219	chr12:62394002-62395774	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62393400-62396600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr12:62393600-62396600	Weak transcription	Primary monocytes fromperipheralblood	blood

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