Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11174304	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11174312	0.98[ASN][1000 genomes]
rs11174313	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11174319	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11174322	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11174344	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs11174350	1.00[CHB][hapmap]
rs1146084	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1146085	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1146086	1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[ASN][1000 genomes]
rs1146087	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs1146088	1.00[CHB][hapmap];0.95[CHD][hapmap];0.87[ASN][1000 genomes]
rs1245360	0.87[ASN][1000 genomes]
rs1245361	1.00[CHB][hapmap];0.95[CHD][hapmap]
rs1245423	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs17657275	0.93[YRI][hapmap]
rs17713527	0.81[YRI][hapmap]
rs17713954	0.92[YRI][hapmap]
rs2028727	0.93[YRI][hapmap]
rs7978888	1.00[CHB][hapmap]
rs9738798	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv832435	chr12:62407000-62601835	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11174303	MIP	cis	parietal	SCAN
rs11174303	KIF5A	cis	parietal	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

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