Variant report

Variant	rs11174631
Chromosome Location	chr12:40385118-40385119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10506143	0.81[AMR][1000 genomes]
rs10506144	0.86[AMR][1000 genomes]
rs11173598	1.00[CHB][hapmap]
rs11174115	1.00[ASW][hapmap]
rs11174697	0.89[AMR][1000 genomes]
rs11174728	1.00[CHB][hapmap]
rs11174995	1.00[CHB][hapmap]
rs11175069	1.00[CHB][hapmap]
rs11175186	0.86[AMR][1000 genomes]
rs11564199	0.88[AMR][1000 genomes]
rs11564216	1.00[ASW][hapmap];1.00[CHD][hapmap];0.82[GIH][hapmap];0.95[MEX][hapmap];0.86[AMR][1000 genomes]
rs11564218	0.81[AMR][1000 genomes]
rs12422544	0.82[AMR][1000 genomes]
rs12423682	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs12424040	0.86[AMR][1000 genomes]
rs12424294	0.81[AMR][1000 genomes]
rs12425630	0.86[AMR][1000 genomes]
rs12426378	0.86[AMR][1000 genomes]
rs12427022	0.81[AMR][1000 genomes]
rs17458549	0.86[AMR][1000 genomes]
rs17559800	0.90[MEX][hapmap]
rs28365169	0.86[AMR][1000 genomes]
rs28365173	0.86[AMR][1000 genomes]
rs28365669	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28365689	0.86[AMR][1000 genomes]
rs28370637	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28370664	0.91[AMR][1000 genomes]
rs28370682	1.00[CHB][hapmap];0.91[AMR][1000 genomes]
rs28370830	0.91[AMR][1000 genomes]
rs4767961	0.84[AMR][1000 genomes]
rs4768206	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4768213	0.86[AMR][1000 genomes]
rs535458	1.00[ASW][hapmap];1.00[MEX][hapmap]
rs545385	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs549790	1.00[ASW][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs566044	1.00[JPT][hapmap]
rs729215	0.86[AMR][1000 genomes]
rs8181671	1.00[CHB][hapmap]
rs953493	0.90[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40364400-40391400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:40366400-40390200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr12:40380800-40393400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr12:40383200-40385800	Weak transcription	Fetal Brain Male	brain
5	chr12:40384400-40391800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:40384400-40405200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr12:40384400-40405400	Weak transcription	Pancreas	Pancrea
8	chr12:40384600-40385800	Weak transcription	Brain Angular Gyrus	brain
9	chr12:40384600-40385800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr12:40384600-40386000	Weak transcription	Lung	lung

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