Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10747971	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10784338	0.92[ASN][1000 genomes]
rs10784353	0.86[ASN][1000 genomes]
rs10784356	0.85[ASN][1000 genomes]
rs10784369	0.81[ASN][1000 genomes]
rs10877990	0.89[ASN][1000 genomes]
rs10878031	0.86[ASN][1000 genomes]
rs1482281	0.87[ASN][1000 genomes]
rs1586038	0.82[ASN][1000 genomes]
rs1600866	0.82[ASN][1000 genomes]
rs1813122	0.86[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2128275	0.80[ASN][1000 genomes]
rs2404352	0.83[ASN][1000 genomes]
rs4625545	0.80[ASN][1000 genomes]
rs550669	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6650226	0.88[ASN][1000 genomes]
rs7313209	0.80[ASN][1000 genomes]
rs7313231	0.80[ASN][1000 genomes]
rs7953129	0.90[ASN][1000 genomes]
rs7954875	0.98[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7959498	0.80[ASN][1000 genomes]
rs7964150	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046428	chr12:40226283-40439843	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv541481	chr12:40226283-40439843	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1052202	chr12:40322607-40406760	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv899027	chr12:40388510-40428561	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40380800-40393400	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr12:40384400-40405200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr12:40384400-40405400	Weak transcription	Pancreas	Pancrea
4	chr12:40390200-40393400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr12:40390400-40392200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

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