Variant report

Variant	rs11174929
Chromosome Location	chr12:63702430-63702431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10219539	0.85[AFR][1000 genomes]
rs10437962	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1107023	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11174945	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11174959	0.88[AFR][1000 genomes]
rs12297735	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12299909	0.92[AFR][1000 genomes]
rs12300423	1.00[AMR][1000 genomes]
rs12305453	1.00[AMR][1000 genomes]
rs12309887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12311676	0.83[AFR][1000 genomes]
rs12318068	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1303183	1.00[AMR][1000 genomes]
rs3929414	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs478074	1.00[AMR][1000 genomes]
rs511720	1.00[AMR][1000 genomes]
rs74097349	0.88[AFR][1000 genomes]
rs7954967	1.00[AMR][1000 genomes]
rs7957105	0.88[AFR][1000 genomes]
rs7979930	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046836	chr12:63392391-64377169	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
2	nsv1035736	chr12:63526274-63920372	Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv541510	chr12:63526274-63920372	Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1052866	chr12:63562442-63879794	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv541511	chr12:63562442-63879794	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv832438	chr12:63571652-63745827	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv832439	chr12:63688083-63865226	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:63699000-63703600	Enhancers	Dnd41	blood
2	chr12:63701600-63703600	Enhancers	Fetal Kidney	kidney
3	chr12:63701800-63703600	Enhancers	NHDF-Ad	bronchial
4	chr12:63702000-63702800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr12:63702200-63703200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr12:63702200-63703400	Weak transcription	Adipose Nuclei	Adipose
7	chr12:63702400-63702800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:63702400-63702800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr12:63702400-63702800	Enhancers	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links