Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10878123	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs10878208	0.81[CHB][hapmap]
rs11175256	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs11175332	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11175371	0.90[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap]
rs11175401	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs11175405	0.95[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs11175422	0.85[CHB][hapmap];0.95[JPT][hapmap]
rs11564115	0.95[JPT][hapmap]
rs1472117	0.95[JPT][hapmap]
rs1491924	0.86[CHB][hapmap];0.95[JPT][hapmap]
rs1491942	0.89[JPT][hapmap]
rs17443199	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2046931	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2131088	0.95[JPT][hapmap]
rs2201144	0.95[JPT][hapmap]
rs2638244	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2638268	0.80[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap]
rs2638270	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2638271	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs2708437	0.95[JPT][hapmap]
rs2708438	0.95[JPT][hapmap]
rs2723269	0.95[JPT][hapmap]
rs28365179	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs7310104	0.87[CHB][hapmap];0.95[JPT][hapmap]
rs949640	0.86[CHB][hapmap];0.95[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv558596	chr12:40413698-40591117	Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1044685	chr12:40574460-40771612	Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40586000-40591000	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr12:40586200-40591600	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr12:40587200-40590400	Enhancers	Primary B cells from peripheral blood	blood
4	chr12:40588000-40590400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:40588600-40590400	Enhancers	Primary hematopoietic stem cells	blood
6	chr12:40589600-40592200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr12:40590200-40592000	Enhancers	Liver	Liver
8	chr12:40590200-40595400	Weak transcription	Primary B cells from cord blood	blood

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