Variant report

Variant	rs111757518
Chromosome Location	chr5:106790629-106790630
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106673737..106675745-chr5:106790045..106792526,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030118	chr5:106006097-106847949	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv462379	chr5:106789764-106806438	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv471037	chr5:106789764-106806438	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv599334	chr5:106789764-106806438	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106772600-106790800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:106785800-106791400	Weak transcription	Dnd41	blood
3	chr5:106786400-106790800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:106787000-106791200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr5:106788600-106791800	Weak transcription	Fetal Thymus	thymus
6	chr5:106789200-106790800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:106789200-106793000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:106789200-106793000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:106789600-106792000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr5:106789600-106792400	Weak transcription	Esophagus	oesophagus
11	chr5:106789600-106793200	Enhancers	HMEC	breast
12	chr5:106789600-106800000	Weak transcription	Aorta	Aorta
13	chr5:106790400-106792200	Enhancers	HSMM	muscle
14	chr5:106790400-106792200	Enhancers	NHEK	skin
15	chr5:106790400-106792400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:106790400-106792600	Enhancers	Fetal Lung	lung
17	chr5:106790400-106793200	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr5:106790400-106793200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:106790600-106790800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr5:106790600-106790800	Enhancers	Fetal Stomach	stomach
21	chr5:106790600-106790800	Enhancers	Right Ventricle	heart
22	chr5:106790600-106791000	Active TSS	Fetal Brain Male	brain
23	chr5:106790600-106791000	Flanking Active TSS	Fetal Heart	heart
24	chr5:106790600-106791000	Enhancers	Small Intestine	intestine
25	chr5:106790600-106791200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:106790600-106791200	Enhancers	Gastric	stomach
27	chr5:106790600-106791400	Enhancers	Rectal Smooth Muscle	rectum
28	chr5:106790600-106791400	Enhancers	Osteobl	bone
29	chr5:106790600-106791600	Enhancers	H1 Cell Line	embryonic stem cell
30	chr5:106790600-106791600	Flanking Active TSS	A549	lung
31	chr5:106790600-106791800	Enhancers	NHLF	lung
32	chr5:106790600-106792200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr5:106790600-106792200	Enhancers	NHDF-Ad	bronchial
34	chr5:106790600-106792400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr5:106790600-106792600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr5:106790600-106792600	Enhancers	Muscle Satellite Cultured Cells	--
37	chr5:106790600-106792600	Enhancers	Placenta	Placenta
38	chr5:106790600-106792800	Enhancers	Fetal Kidney	kidney
39	chr5:106790600-106793000	Enhancers	ES-I3 Cell Line	embryonic stem cell
40	chr5:106790600-106793200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr5:106790600-106793200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr5:106790600-106793200	Enhancers	Primary neutrophils fromperipheralblood	blood
43	chr5:106790600-106793200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr5:106790600-106793200	Enhancers	Placenta Amnion	Placenta Amnion
45	chr5:106790600-106793800	Enhancers	iPS-15b Cell Line	embryonic stem cell
46	chr5:106790600-106793800	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr5:106790600-106793800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr5:106790600-106794000	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr5:106790600-106794000	Enhancers	iPS-20b Cell Line	embryonic stem cell
50	chr5:106790600-106794000	Enhancers	GM12878-XiMat	blood

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